RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 COL27A1Q8IZC6 1860 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 IGLV3-16A0A075B6K0 115 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 C17orf113A0A1B0GUU1 675 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 MAGEB16A2A368 324 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 CCDC78A2IDD5 438 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 CCDC162PA2VCL2 907 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 A6NCN8 305 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 TRABD2BA6NFA1 517 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 PRR19A6NJB7 356 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 FANCGO15287 622 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 B4GAT1O43505 415 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 RPLP0P05388 317 aaKnown RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 ALDH4A1P30038 563 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 PPARGP37231 505 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 CDKN1CP49918 316 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 ARSDP51689 593 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 CTSCP53634 463 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 TERF1P54274 439 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 CLDN6P56747 220 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 PRAMEP78395 509 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 HHEXQ03014 270 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 ITIH4Q14624 930 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 KCTD19Q17RG1 926 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 ISXQ2M1V0 245 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 BCL7AQ4VC05 210 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 AGAP9Q5VTM2 703 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 AFTPHQ6ULP2 937 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 CERS6Q6ZMG9 384 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 SYDE1Q6ZW31 735 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 ZNF534Q76KX8 674 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 DET1Q7L5Y6 550 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 SPRED1Q7Z699 444 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 SERPINA9Q86WD7 417 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 MARCH9Q86YJ5 346 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 BEND7Q8N7W2 519 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 Q8N9G6 341 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 OR6P1Q8NGX9 317 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 OR2L2Q8NH16 312 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 OR4L1Q8NH43 312 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 SLC37A2Q8TED4 501 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 LINC00615Q96LM1 132 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 ZNF778Q96MU6 729 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 GFM1Q96RP9 751 aaKnown RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 KIFC1Q9BW19 673 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 TMEM121BQ9BXQ6 578 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 OSGEPL1Q9H4B0 414 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 MRM3Q9HC36 420 aaKnown RBP10.51□□□□□ -0.73
LINC00239-201ENST00000556973 PRDM8Q9NQV8 689 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 SLC2A6Q9UGQ3 507 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 DNAJC16Q9Y2G8 782 aa10.51□□□□□ -0.73
LINC00239-201ENST00000556973 A0A1W2PQM1 296 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 TMEM8BA6NDV4 472 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 MGAT4DA6NG13 374 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 SDR42E2A6NKP2 422 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 PDZK1P1A8MUH7 402 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 C1QTNF9BB2RNN3 333 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 TMX2-CTNND1H3BSU7 103 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 SGTAO43765 313 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 CSO75390 466 aaKnown RBP10.5□□□□□ -0.73
LINC00239-201ENST00000556973 AP2A2O94973 939 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 GOT2P00505 430 aaKnown RBP10.5□□□□□ -0.73
LINC00239-201ENST00000556973 PROS1P07225 676 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 GSTM1P09488 218 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 C1QTNF9P0C862 333 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 MGAT1P26572 445 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 RPL10P27635 214 aaKnown RBP10.5□□□□□ -0.73
LINC00239-201ENST00000556973 FOXN2P32314 431 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 HALP42357 657 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 NSG1P42857 185 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 PTGIRP43119 386 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 OR1D5P58170 312 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 CRADDP78560 199 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 GSTM4Q03013 218 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 SQSTM1Q13501 440 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 PTK6Q13882 451 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 CLPPQ16740 277 aaPredicted RBP10.5□□□□□ -0.73
LINC00239-201ENST00000556973 FASTKD1Q53R41 847 aaKnown RBP10.5□□□□□ -0.73
LINC00239-201ENST00000556973 ANKRD22Q5VYY1 191 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 METRNLQ641Q3 311 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 UNQ6494/PRO21346Q6UXR6 183 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 SYT10Q6XYQ8 523 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 PIM3Q86V86 326 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 CAND1Q86VP6 1230 aaKnown RBP10.5□□□□□ -0.73
LINC00239-201ENST00000556973 KLHL7Q8IXQ5 586 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 PPIL6Q8IXY8 311 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 PIANPQ8IYJ0 282 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 NAT8LQ8N9F0 302 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.5□□□□□ -0.73
LINC00239-201ENST00000556973 CNTNAP3BQ96NU0 1288 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 SLC38A3Q99624 504 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 CNTNAP3Q9BZ76 1288 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 VPS37BQ9H9H4 285 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 XAB2Q9HCS7 855 aaKnown RBP10.5□□□□□ -0.73
LINC00239-201ENST00000556973 TREX1Q9NSU2 369 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 CPNE7Q9UBL6 633 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 ANAPC5Q9UJX4 755 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 ACSL5Q9ULC5 683 aa10.5□□□□□ -0.73
LINC00239-201ENST00000556973 SOX13Q9UN79 622 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms