RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RAXQ9Y2V3 346 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 SLC30A1Q9Y6M5 507 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 IGHV1OR21-1A0A087WYE8 117 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 CCDC187A0A096LP49 1063 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 POP7O75817 140 aaKnown RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 CPNE6O95741 557 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 BRAFP15056 766 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 VCLP18206 1134 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 PSMA3P25788 255 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 RPL10P27635 214 aaKnown RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 CD1CP29017 333 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 PBLDP30039 288 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 CCKBRP32239 447 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 LSSP48449 732 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 VPS41P49754 854 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 CDKN1CP49918 316 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 DRG2P55039 364 aaKnown RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 UBE2IP63279 158 aaKnown RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 DMPKQ09013 629 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 TRIP13Q15645 432 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 CYP1B1Q16678 543 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 ZRANB3Q5FWF4 1079 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 NKAIN2Q5VXU1 208 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 TMEM220Q6QAJ8 160 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 C4orf22Q6V702 233 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 FAM83HQ6ZRV2 1179 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 SLC9B2Q86UD5 537 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 AMZ2Q86W34 360 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 SLITRK4Q8IW52 837 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 MAGOHBQ96A72 148 aaKnown RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 SGF29Q96ES7 293 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 LIN37Q96GY3 246 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 CDKN2AIPNLQ96HQ2 116 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 TMEM74Q96NL1 305 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 NAP1L3Q99457 506 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 SLC38A3Q99624 504 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 STN1Q9H668 368 aaKnown RBP13.49□□□□□ -0.25
SHMT2-219ENST00000555563 CPNE7Q9UBL6 633 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 LHX6Q9UPM6 363 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 KNTC1P50748 2209 aa13.49□□□□□ -0.25
SHMT2-219ENST00000555563 FAM208BQ5VWN6 2430 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 TRBV5-4A0A0C4DH59 114 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 HEATR9A2RTY3 570 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 OR51F1A6NGY5 319 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 OR5K4A6NMS3 321 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ZNF185O15231 689 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ZW10O43264 779 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 TLX3O43711 291 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-219ENST00000555563 SGTAO43765 313 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 DXOO77932 396 aaKnown RBP13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ACRV1P26436 265 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 CACNG1Q06432 222 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ZFP36L1Q07352 338 aaKnown RBP13.48□□□□□ -0.25
SHMT2-219ENST00000555563 NFE2L1Q14494 772 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 GSE1Q14687 1217 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 CLPPQ16740 277 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-219ENST00000555563 TBC1D25Q3MII6 688 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 GPR33Q49SQ1 333 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 BCL7AQ4VC05 210 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 AGAP9Q5VTM2 703 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ABRAXAS1Q6UWZ7 409 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 USP53Q70EK8 1073 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 PIM3Q86V86 326 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 PIANPQ8IYJ0 282 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 AVL9Q8NBF6 648 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 OR13J1Q8NGT2 312 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ACTRT1Q8TDG2 376 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 DCUN1D1Q96GG9 259 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 PRR11Q96HE9 360 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ZNF514Q96K75 400 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-219ENST00000555563 RANBP9Q96S59 729 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 COPS8Q99627 209 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 STRADBQ9C0K7 418 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ZMYND15Q9H091 742 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 SEMA6CQ9H3T2 930 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ASCL3Q9NQ33 180 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 ZNF624Q9P2J8 865 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-219ENST00000555563 SLC2A6Q9UGQ3 507 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 WDR37Q9Y2I8 494 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 TCAF1Q9Y4C2 921 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 PCDHGA8Q9Y5G5 932 aa13.48□□□□□ -0.25
SHMT2-219ENST00000555563 DMXL2Q8TDJ6 3036 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 IGLV3-16A0A075B6K0 115 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 CCDC162PA2VCL2 907 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 OR52A4PA6NMU1 304 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 CFAP99D6REC4 459 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 AGRPO00253 132 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 CES2O00748 559 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 KCNJ13O60928 360 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 PHF2O75151 1096 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 RALBP11234 206 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 IDSP22304 550 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 ADRA1DP25100 572 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 FOXN2P32314 431 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 PRLHRP49683 370 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 SESN2P58004 480 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-219ENST00000555563 GNG11P61952 73 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 GPLD1P80108 840 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 CFHR1Q03591 330 aa13.47□□□□□ -0.25
SHMT2-219ENST00000555563 GPS1Q13098 491 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms