RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SMAD1Q15797 465 aaKnown RBP7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 DDR2Q16832 855 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 LDLRAP1Q5SW96 308 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 FAM171A1Q5VUB5 890 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 ARHGAP11AQ6P4F7 1023 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SHQ1Q6PI26 577 aaKnown RBP7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC39A5Q6ZMH5 540 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CYP2U1Q7Z449 544 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CCDC36Q8IYA8 594 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 ZNF567Q8N184 647 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC15A4Q8N697 577 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 TBC1D15Q8TC07 691 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SIGLEC10Q96LC7 697 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 EIF2B3Q9NR50 452 aaKnown RBP7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SIRPGQ9P1W8 387 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 RIMS3Q9UJD0 308 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 PTBP2Q9UKA9 531 aaKnown RBP7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 PADI4Q9UM07 663 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SORCS3Q9UPU3 1222 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 PCDHGA10Q9Y5H3 936 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CORINQ9Y5Q5 1042 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 GREB1Q4ZG55 1949 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 A0A1B0GWJ7 208 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC9B1P1A6NJY1 282 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 OR6C75A6NL08 312 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CXorf49A8MYA2 514 aaPredicted RBP7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 KCNU1A8MYU2 1149 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 H3BNH8 94 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 RGS13O14921 159 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 MSI1O43347 362 aaKnown RBP7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CLN5O75503 358 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 BPGMP07738 259 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 APRTP07741 180 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 GFAPP14136 432 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 JAK1P23458 1154 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CXCR2P25025 360 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 PBX3P40426 434 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC1A6P48664 564 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 IDH3AP50213 366 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CCINQ13939 588 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 OCLNQ16625 522 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 USP41Q3LFD5 358 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CTXN3Q4LDR2 81 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 MSANTD2Q6P1R3 559 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 FUT10Q6P4F1 479 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SH2D5Q6ZV89 423 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 TAS1R1Q7RTX1 841 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC26A11Q86WA9 606 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC22A9Q8IVM8 553 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 FAM47BQ8NA70 645 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 MAP6Q96JE9 813 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 ZNF778Q96MU6 729 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 SERPINI1Q99574 410 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 TMEM175Q9BSA9 504 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 HIPK3Q9H422 1215 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 EPS8L2Q9H6S3 715 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 UCK1Q9HA47 277 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CXorf21Q9HAI6 301 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 CPNE7Q9UBL6 633 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 TNFRSF10DQ9UBN6 386 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 POU2F3Q9UKI9 436 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 PCDHB5Q9Y5E4 795 aa7.93□□□□□ -1.14
PDLIM5-221ENST00000542407 E2F8A0AVK6 867 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 MAGEB16A2A368 324 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 MTMR11A4FU01 709 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SOBPA7XYQ1 873 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 STX16-NPEPL1H3BU86 382 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PLOD2O00469 737 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 FBXO45P0C2W1 286 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CPB1P15086 417 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 MX2P20592 715 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PTPN3P26045 913 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 HNRNPFP52597 415 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 HK2P52789 917 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC12A2P55011 1212 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 MS4A2Q01362 244 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SNTA1Q13424 505 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 TUBB3Q13509 450 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 AARS2Q5JTZ9 985 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 BRMS1LQ5PSV4 323 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 LGSNQ5TDP6 509 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 C1orf53Q5VUE5 145 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 RWDD4Q6NW29 188 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 GALNT18Q6P9A2 607 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ABRAXAS1Q6UWZ7 409 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 TMEM26Q6ZUK4 368 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ABI1Q8IZP0 508 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 MPP5Q8N3R9 675 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 COLGALT1Q8NBJ5 622 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ATAD1Q8NBU5 361 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CHPT1Q8WUD6 406 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CNDP2Q96KP4 475 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PGLYRP2Q96PD5 576 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 VN1R3Q9BXE9 311 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 NAA50Q9GZZ1 169 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 STMN3Q9NZ72 180 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 NCKIPSDQ9NZQ3 722 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 EIF2B4Q9UI10 523 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 hCG_2039718K7EN88 272 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CCRL2O00421 344 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms