RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 NFE2L1Q14494 772 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 SEMA3AQ14563 771 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 RTP5Q14D33 572 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 SEPT7Q16181 437 aaKnown RBP9.57□□□□□ -0.88
YBX3-212ENST00000542002 INSCQ1MX18 579 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 SKIDA1Q1XH10 827 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 AMZ1Q400G9 498 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 ZNF658BQ4V348 819 aaPredicted RBP9.57□□□□□ -0.88
YBX3-212ENST00000542002 ZRANB3Q5FWF4 1079 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 TSTD2Q5T7W7 516 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 C4orf22Q6V702 233 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 RBM44Q6ZP01 1051 aaKnown RBP9.57□□□□□ -0.88
YBX3-212ENST00000542002 CAND1Q86VP6 1230 aaKnown RBP9.57□□□□□ -0.88
YBX3-212ENST00000542002 SERPINA9Q86WD7 417 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 TRAPPC5Q8IUR0 188 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 AGGF1Q8N302 714 aaeCLIP9.57□□□□□ -0.88
YBX3-212ENST00000542002 MPP5Q8N3R9 675 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 LILRA3Q8N6C8 439 aaPredicted RBP9.57□□□□□ -0.88
YBX3-212ENST00000542002 CLDN19Q8N6F1 224 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 CPT1BQ92523 772 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 CAPZA3Q96KX2 299 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 TTC25Q96NG3 672 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 DEPDC7Q96QD5 511 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 GFM1Q96RP9 751 aaKnown RBP9.57□□□□□ -0.88
YBX3-212ENST00000542002 RANBP9Q96S59 729 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 NUDT22Q9BRQ3 303 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 TRIM56Q9BRZ2 755 aaKnown RBP9.57□□□□□ -0.88
YBX3-212ENST00000542002 TIMM29Q9BSF4 260 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 SEMA6CQ9H3T2 930 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 OSGEPL1Q9H4B0 414 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 RDH14Q9HBH5 336 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 EVA1BQ9NVM1 165 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 TMEM9Q9P0T7 183 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 ZMIZ1Q9ULJ6 1067 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 CEP295Q9C0D2 2601 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 SCN8AQ9UQD0 1980 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 ZZEF1O43149 2961 aa9.57□□□□□ -0.88
YBX3-212ENST00000542002 CHD8Q9HCK8 2581 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 COL27A1Q8IZC6 1860 aaPredicted RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 IGHV1OR21-1A0A087WYE8 117 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 OR52A4PA6NMU1 304 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 D6RAR5 112 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 AGRPO00253 132 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 OR1I1O60431 355 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 PHF2O75151 1096 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 TCEA3O75764 348 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 TMEM63AO94886 807 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 GOT2P00505 430 aaKnown RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 ATP1B2P14415 290 aaPredicted RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 TCP1P17987 556 aaKnown RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 XRCC1P18887 633 aaPredicted RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 TPSB2P20231 275 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 MSH3P20585 1137 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 MPSTP25325 297 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 ACRV1P26436 265 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 MGAT1P26572 445 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 NMBRP28336 390 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 AKT1P31749 480 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 FOXN2P32314 431 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 UBE2IP63279 158 aaKnown RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 CACNG1Q06432 222 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 SPIDRQ14159 915 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 TPSAB1Q15661 275 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 DBN1Q16643 649 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 ST3GAL2Q16842 350 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 GPR33Q49SQ1 333 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 PCID2Q5JVF3 399 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 METRNLQ641Q3 311 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 LRRC8BQ6P9F7 803 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 CES3Q6UWW8 571 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 ABRAXAS1Q6UWZ7 409 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 TAS2R42Q7RTR8 314 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 LDB1Q86U70 411 aaPredicted RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 AMZ2Q86W34 360 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 LRRC45Q96CN5 670 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 LINC00615Q96LM1 132 aaPredicted RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 NAP1L3Q99457 506 aaPredicted RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 TBC1D10AQ9BXI6 508 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 NRSN2Q9GZP1 204 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 DDX47Q9H0S4 455 aaKnown RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 SYNDIG1Q9H7V2 258 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 TREX1Q9NSU2 369 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 SYBUQ9NX95 663 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 ZDHHC3Q9NYG2 299 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 MARCH4Q9P2E8 410 aaPredicted RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 CPNE7Q9UBL6 633 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 CRLS1Q9UJA2 301 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 PSMD13Q9UNM6 376 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 TCAF1Q9Y4C2 921 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 SAR1BQ9Y6B6 198 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 DNMT3AQ9Y6K1 912 aaPredicted RBP9.56□□□□□ -0.88
YBX3-212ENST00000542002 SLC30A1Q9Y6M5 507 aa9.56□□□□□ -0.88
YBX3-212ENST00000542002 KIR2DS5A0A0G2JLQ3 304 aa9.55□□□□□ -0.88
YBX3-212ENST00000542002 A0A0G2JNG1 304 aa9.55□□□□□ -0.88
YBX3-212ENST00000542002 HEATR9A2RTY3 570 aa9.55□□□□□ -0.88
YBX3-212ENST00000542002 MGAT4DA6NG13 374 aa9.55□□□□□ -0.88
YBX3-212ENST00000542002 GOLGA8MH3BSY2 632 aa9.55□□□□□ -0.88
YBX3-212ENST00000542002 KIR2DS3K7RE56 304 aa9.55□□□□□ -0.88
YBX3-212ENST00000542002 TLX3O43711 291 aaPredicted RBP9.55□□□□□ -0.88
YBX3-212ENST00000542002 BRINP1O60477 761 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms