RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SPATS2LQ9NUQ6 558 aaKnown RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 PADI4Q9UM07 663 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 SNX24Q9Y343 169 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 PLEKHM1Q9Y4G2 1056 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 PCYT1BQ9Y5K3 369 aaPredicted RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 MAD1L1Q9Y6D9 718 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 PLXNB3Q9ULL4 1909 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 ZFC3H1O60293 1989 aaKnown RBP14.05□□□□□ -0.16
NUP54-216ENST00000514901 LY6G6EA0A0G2JKS1 128 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 OR51F1A6NGY5 319 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 CD3EAPO15446 510 aaKnown RBP14.05□□□□□ -0.16
NUP54-216ENST00000514901 RFPL3O75679 317 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 USP1O94782 785 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 DKK1O94907 266 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 VAPBO95292 243 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 TTC4O95801 387 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 TTPAP49638 278 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 ACADVLP49748 655 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 CDKN1CP49918 316 aaPredicted RBP14.05□□□□□ -0.16
NUP54-216ENST00000514901 CTSCP53634 463 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 ARL4CP56559 192 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 B4GALNT1Q00973 533 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 CAV1Q03135 178 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 DMPKQ09013 629 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 DNAJC3Q13217 504 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 DBN1Q16643 649 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 ANKRD20A4Q4UJ75 823 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 C14orf28Q4W4Y0 310 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 FNBP1LQ5T0N5 605 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 N4BP2L1Q5TBK1 243 aaPredicted RBP14.05□□□□□ -0.16
NUP54-216ENST00000514901 DUPD1Q68J44 220 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 MRNIPQ6NTE8 343 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 C11orf96Q7Z7L8 435 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 SDCCAG8Q86SQ7 713 aaPredicted RBP14.05□□□□□ -0.16
NUP54-216ENST00000514901 SLCO6A1Q86UG4 719 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 MMGT1Q8N4V1 131 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 CEP112Q8N8E3 955 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 AVL9Q8NBF6 648 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 SGF29Q96ES7 293 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 TCF12Q99081 682 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 TOR4AQ9NXH8 423 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 SIRPGQ9P1W8 387 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 KCNK6Q9Y257 313 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 ST14Q9Y5Y6 855 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 RPS6KL1Q9Y6S9 549 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 U3KQA8 63 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 BPTFQ12830 3046 aa14.05□□□□□ -0.16
NUP54-216ENST00000514901 C17orf113A0A1B0GUU1 675 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 MGAT4DA6NG13 374 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 OR2AG2A6NM03 316 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 B4DGG1 531 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 ZW10O43264 779 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 NOBOXO60393 691 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 POLBP06746 335 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 PNLIPP16233 465 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 GLB1P16278 677 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 PGAM1P18669 254 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 IDSP22304 550 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 PMLP29590 882 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 ARCN1P48444 511 aaKnown RBP14.04□□□□□ -0.16
NUP54-216ENST00000514901 MRPS25P82663 173 aaKnown RBP14.04□□□□□ -0.16
NUP54-216ENST00000514901 DHX9Q08211 1270 aaKnown RBP14.04□□□□□ -0.16
NUP54-216ENST00000514901 CBLBQ13191 982 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 HIF1AQ16665 826 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 GLE1Q53GS7 698 aaKnown RBP14.04□□□□□ -0.16
NUP54-216ENST00000514901 C8orf74Q6P047 294 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 IYDQ6PHW0 289 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 CES3Q6UWW8 571 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 WASH2PQ6VEQ5 465 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 DET1Q7L5Y6 550 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 C17orf82Q86X59 251 aaPredicted RBP14.04□□□□□ -0.16
NUP54-216ENST00000514901 KYQ8NBH2 561 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 GPR150Q8NGU9 434 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 GABPB2Q8TAK5 448 aaPredicted RBP14.04□□□□□ -0.16
NUP54-216ENST00000514901 ADAMTS14Q8WXS8 1223 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 EBNA1BP2Q99848 306 aaKnown RBP14.04□□□□□ -0.16
NUP54-216ENST00000514901 WASH6PQ9NQA3 447 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 SLC23A2Q9UGH3 650 aa14.04□□□□□ -0.16
NUP54-216ENST00000514901 PIKFYVEQ9Y2I7 2098 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 RP1P56715 2156 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 KIR2DS5A0A0G2JLQ3 304 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 A0A0G2JNG1 304 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 CPED1A4D0V7 1026 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 PRR19A6NJB7 356 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 KIR2DS3K7RE56 304 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 TP73O15350 636 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 NUDT21O43809 227 aaKnown RBP14.03□□□□□ -0.16
NUP54-216ENST00000514901 PRSS56P0CW18 603 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 F3P13726 295 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 ARNTP27540 789 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 PRLHRP49683 370 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 BIRC2Q13490 618 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 HLTFQ14527 1009 aaKnown RBP eCLIP14.03□□□□□ -0.16
NUP54-216ENST00000514901 KIR2DS5Q14953 304 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 LONRF1Q17RB8 773 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 BBS9Q3SYG4 887 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 RNF187Q5TA31 235 aaPredicted RBP14.03□□□□□ -0.16
NUP54-216ENST00000514901 AGAP9Q5VTM2 703 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 NEPROQ6NW34 567 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 ABRAXAS1Q6UWZ7 409 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms