RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PDCD11Q14690 1871 aaKnown RBP9.56□□□□□ -0.88
VCAN-210ENST00000513960 MYADML2A6NDP7 307 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 UBXN8O00124 270 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 FGF10O15520 208 aaPredicted RBP9.56□□□□□ -0.88
VCAN-210ENST00000513960 DUSP11O75319 330 aaKnown RBP9.56□□□□□ -0.88
VCAN-210ENST00000513960 PAGE1O75459 146 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 SLC6A2P23975 617 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 HTR1BP28222 390 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 GTF2E2P29084 291 aaKnown RBP9.56□□□□□ -0.88
VCAN-210ENST00000513960 THPOP40225 353 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 ARPC4P59998 168 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 MAXP61244 160 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 CACNB2Q08289 660 aaPredicted RBP9.56□□□□□ -0.88
VCAN-210ENST00000513960 VAC14Q08AM6 782 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 AQP6Q13520 282 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 DAG1Q14118 895 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 PLA2G4EQ3MJ16 856 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 BRMS1LQ5PSV4 323 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 TTC23Q5W5X9 447 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 ANKRD34AQ69YU3 496 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 GDF6Q6KF10 455 aaPredicted RBP9.56□□□□□ -0.88
VCAN-210ENST00000513960 SLC22A9Q8IVM8 553 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 FUNDC1Q8IVP5 155 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 SCN4BQ8IWT1 228 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 MCOLN3Q8TDD5 553 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 SOCS4Q8WXH5 440 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 ZHX1-C8orf76Q96EF9 292 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 TSPAN17Q96FV3 270 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 PPP1R2P1Q96PQ5 205 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 TP63Q9H3D4 680 aaPredicted RBP9.56□□□□□ -0.88
VCAN-210ENST00000513960 ZNF385DQ9H6B1 395 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 PRDM8Q9NQV8 689 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 RASSF1Q9NS23 344 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 INTS10Q9NVR2 710 aaKnown RBP9.56□□□□□ -0.88
VCAN-210ENST00000513960 SLAMF8Q9P0V8 285 aa9.56□□□□□ -0.88
VCAN-210ENST00000513960 SOBPA7XYQ1 873 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 IRAK2O43187 625 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 APOA1P02647 267 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 ENO2P09104 434 aaPredicted RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 ZNF37AP17032 561 aaPredicted RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 CD52P31358 61 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 FOXA1P55317 472 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 MADCAM1Q13477 382 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 OXA1LQ15070 435 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 BHLHA9Q7RTU4 235 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 SPARTQ8N0X7 666 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 FCRL2Q96LA5 508 aaPredicted RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 CSF3RQ99062 836 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 ROGDIQ9GZN7 287 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 RGS18Q9NS28 235 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 PADI3Q9ULW8 664 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.55□□□□□ -0.88
VCAN-210ENST00000513960 SOAT2O75908 522 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 CHRNA1P02708 482 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 PIRTP0C851 137 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 S100A5P33763 92 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 OR4D2P58180 307 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 PHC1P78364 1004 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 PSMD5Q16401 504 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 SYT16Q17RD7 645 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 TIGD7Q6NT04 549 aaPredicted RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 PLEKHG7Q6ZR37 379 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 TSGA13Q96PP4 275 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 FCRL5Q96RD9 977 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 ATP13A3Q9H7F0 1226 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 MEAF6Q9HAF1 191 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 ENTPD7Q9NQZ7 604 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 FAM50BQ9Y247 325 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 ZNF99A8MXY4 864 aaPredicted RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 FAM155AB1AL88 458 aaPredicted RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 FAM47E-STBD1D6RA91 191 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 DLGAP1O14490 977 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 MATN3O15232 486 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 MSI1O43347 362 aaKnown RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 FAM20BO75063 409 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 HOXC8P31273 242 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 ZNF157P51786 506 aaPredicted RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 UFM1P61960 85 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 SGO1Q5FBB7 561 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 HECTD2Q5U5R9 776 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 FAM171BQ6P995 826 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 P2RY8Q86VZ1 359 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 ARMC8Q8IUR7 673 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 FAM126BQ8IXS8 530 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 PNPT1Q8TCS8 783 aaKnown RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 ZUFSPQ96AP4 578 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 RTP3Q9BQQ7 232 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 MROQ9BYG7 248 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 AGO3Q9H9G7 860 aaKnown RBP9.55□□□□□ -0.88
VCAN-210ENST00000513960 TMLHEQ9NVH6 421 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 MAP10Q9P2G4 905 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 NOD1Q9Y239 953 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 PCDHGA8Q9Y5G5 932 aa9.55□□□□□ -0.88
VCAN-210ENST00000513960 SHROOM3Q8TF72 1996 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 BBIP1A8MTZ0 92 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 PDZK1P1A8MUH7 402 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 HSMCR30P0CW71 290 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 BMP4P12644 408 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 UGT3A1Q6NUS8 523 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TRAF7Q6Q0C0 670 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms