RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CFHP08603 1231 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 C7P10643 843 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 HLCSP50747 726 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 FGD3Q5JSP0 725 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 HECTD3Q5T447 861 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 CACTIN-AS1Q8N1I8 211 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 OR5K1Q8NHB7 308 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 STON2Q8WXE9 905 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 SIGLEC10Q96LC7 697 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 KCTD15Q96SI1 283 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 SH3BP4Q9P0V3 963 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 CENPBD1B2RD01 187 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ZNF24P17028 368 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 PROZP22891 400 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 PSMA1P25786 263 aaKnown RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 SLC15A1P46059 708 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ALDH6A1Q02252 535 aaKnown RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 CAMK2GQ13555 558 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ZNF404Q494X3 552 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 HECTD2Q5U5R9 776 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 C16orf59Q7L2K0 433 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 IPCEF1Q8WWN9 437 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 LRRC58Q96CX6 371 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 OR2B2Q9GZK3 357 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 OSGEPL1Q9H4B0 414 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 IGFLR1Q9H665 355 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ZFP14Q9HCL3 533 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 COL1A2P08123 1366 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 SETD1AO15047 1707 aaKnown RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 BAZ2AQ9UIF9 1905 aaKnown RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 SOWAHBA6NEL2 793 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 SSNA1O43805 119 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 ULK1O75385 1050 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 ALDH1A2O94788 518 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 IGSF6O95976 241 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 NTRK1P04629 796 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 PPM1AP35813 382 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 SLC16A1P53985 500 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 ZCCHC8Q6NZY4 707 aaKnown RBP11.15□□□□□ -0.63
TCOF1-211ENST00000513346 DCLRE1AQ6PJP8 1040 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 CHST15Q7LFX5 561 aaPredicted RBP11.15□□□□□ -0.63
TCOF1-211ENST00000513346 R3HCC1LQ7Z5L2 792 aaKnown RBP11.15□□□□□ -0.63
TCOF1-211ENST00000513346 SLC7A5P1Q8MH63 180 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 TTC29Q8NA56 475 aaPredicted RBP11.15□□□□□ -0.63
TCOF1-211ENST00000513346 TMBIM1Q969X1 311 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 SLC45A3Q96JT2 553 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 KLHL31Q9H511 634 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 PCDHGA3Q9Y5H0 932 aa11.15□□□□□ -0.63
TCOF1-211ENST00000513346 VILLO15195 856 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 DNAJB5O75953 348 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 HDCP19113 662 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 ARL2P36404 184 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 PIK3CGP48736 1102 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 ALDH3A2P51648 485 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 TAS2R39P59534 338 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 OGDHQ02218 1023 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 PPIGQ13427 754 aaKnown RBP eCLIP11.14□□□□□ -0.632e-7■■□□□ 13.8
TCOF1-211ENST00000513346 PPP1R26Q5T8A7 1209 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 ERAP2Q6P179 960 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 C11orf88Q6PI97 169 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 ZNF517Q6ZMY9 492 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 TPGS1Q6ZTW0 290 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 FGD2Q7Z6J4 655 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 IFNLR1Q8IU57 520 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 PHACTR4Q8IZ21 702 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 TP53INP1Q96A56 240 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 KRBA1A5PL33 1030 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 H0YAE9 185 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 ACADMP11310 421 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 CREMQ03060 361 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 BCL2L1Q07817 233 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 LGALS3BPQ08380 585 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 USP41Q3LFD5 358 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 LCN1P1Q5VSP4 162 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 CES5AQ6NT32 575 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 KRT74Q7RTS7 529 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 COPS4Q9BT78 406 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 LRRC3Q9BY71 257 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 NIFKQ9BYG3 293 aaKnown RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 TOR3AQ9H497 397 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 MKLN1Q9UL63 735 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 ZNF510Q9Y2H8 683 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 MAFBQ9Y5Q3 323 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 PTCH2Q9Y6C5 1203 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 KAT6AQ92794 2004 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 MOXD2PA6NHM9 499 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 OR6C70A6NIJ9 312 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 KPNA3O00505 521 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 PIP5K1BO14986 540 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 CILPO75339 1184 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 CYP11A1P05108 521 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 FMO3P31513 532 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 BMXP51813 675 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 PMS2P3Q13401 168 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 TUSC3Q13454 348 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 PIGGQ5H8A4 983 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 RTL3Q8N8U3 475 aaKnown RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 ANKFN1Q8N957 763 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 POLR1EQ9GZS1 481 aaKnown RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 CREBZFQ9NS37 354 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms