RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 UGT1A3P35503 534 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 UGT1A5P35504 534 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 OPRD1P41143 372 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 MRPS15P82914 257 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 STX3Q13277 289 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 SEMA5AQ13591 1074 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ARHGEF7Q14155 803 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM214AQ32MH5 1076 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 TMEM184AQ6ZMB5 413 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 TSPAN33Q86UF1 283 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 PDSS2Q86YH6 399 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 OR4K2Q8NGD2 314 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 HTRA1Q92743 480 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 PBXIP1Q96AQ6 731 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ELSPBP1Q96BH3 223 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 FCRL5Q96RD9 977 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CIB1Q99828 191 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 OSBPL10Q9BXB5 764 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ACE2Q9BYF1 805 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ITM2CQ9NQX7 267 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 IGSF9Q9P2J2 1179 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 PSMD12O00232 456 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CD160O95971 181 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 PEX11BO96011 259 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 POLBP06746 335 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 PRKCHP24723 683 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 GRSF1Q12849 480 aaKnown RBP eCLIP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 STARD3Q14849 445 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 SMUG1Q53HV7 270 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CARD16Q5EG05 197 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM151BQ6UXP7 276 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 Q6ZS52 159 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 LRRC49Q8IUZ0 686 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 OFCC1Q8IZS5 231 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CLIP4Q8N3C7 705 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 RPLP0P6Q8NHW5 317 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ARRDC2Q8TBH0 407 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 HDAC10Q969S8 669 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 IMP4Q96G21 291 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 TBATAQ96M53 351 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 NSMCE3Q96MG7 304 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 OSBPL6Q9BZF3 934 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CRYL1Q9Y2S2 319 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 NYNRINQ9P2P1 1898 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM149AA5PLN7 773 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 AKAP10O43572 662 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CLDN7O95471 211 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 MT-ND1P03886 318 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 HOXB2P14652 356 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 PORP16435 677 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ALDH4A1P30038 563 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 IL1RL1Q01638 556 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 MSLNQ13421 630 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ZNF362Q5T0B9 420 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 TTC33Q6PID6 262 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 UNC5AQ6ZN44 842 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 LYSMD3Q7Z3D4 306 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 LINC00523Q86TU6 105 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CENPSQ8N2Z9 138 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM47BQ8NA70 645 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 BHLHE22Q8NFJ8 381 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM3CQ92520 227 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 SNX19Q92543 992 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 SLCO2A1Q92959 643 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ALG14Q96F25 216 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 COX4I2Q96KJ9 171 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CITED4Q96RK1 184 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 AGAP2Q99490 1192 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 ADGRE3Q9BY15 652 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 GID8Q9NWU2 228 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 HACD3Q9P035 362 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 LHX3Q9UBR4 397 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 DMTF1Q9Y222 760 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CKMT2P17540 419 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 MPP7Q5T2T1 576 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 GALNT18Q6P9A2 607 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 RFLNAQ6ZTI6 216 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 NEK10Q6ZWH5 1172 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 PCDH20Q8N6Y1 951 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 COQ7Q99807 217 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 OMDQ99983 421 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 TPSD1Q9BZJ3 242 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 AASDHPPTQ9NRN7 309 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM50BQ9Y247 325 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 SPO11Q9Y5K1 396 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 COMMD10Q9Y6G5 202 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 STON1Q9Y6Q2 735 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 CACNA1IQ9P0X4 2223 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 OBSL1O75147 1896 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 IQANK1A0A1B0GTG1 560 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 FUOMA2VDF0 154 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 INPP4BO15327 924 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 TP73O15350 636 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 LZTS3O60299 673 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 ADAM23O75077 832 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 MTX2O75431 263 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 ZNF182P17025 639 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 PFKLP17858 780 aa8.59□□□□□ -1.03
LIMCH1-209ENST00000509277 DRG2P55039 364 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms