RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TMEM181Q9P2C4 612 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 TCRBV3S1A0A5B6 114 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 K7ERQ8 282 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 ATP6V1G1O75348 118 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 PARNO95453 639 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 ALPIP09923 528 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 ZNF182P17025 639 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 GKP32189 559 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 NFYCQ13952 458 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 TYSND1Q2T9J0 566 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 PAGE3Q5JUK9 113 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 HECTD3Q5T447 861 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 TAS2R42Q7RTR8 314 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 RNF145Q96MT1 663 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 ARPC2O15144 300 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 KDELR3O43731 214 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 C1RP00736 705 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 EPOP01588 193 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 PIK3CGP48736 1102 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 NFKB2Q00653 900 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 LAPTM5Q13571 262 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 NPAS4Q8IUM7 802 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 HS3ST5Q8IZT8 346 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 BPIFB6Q8NFQ5 453 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 FUBP1Q96AE4 644 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 TRMOQ9BU70 441 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 CXorf21Q9HAI6 301 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 ZNF225Q9UK10 706 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 C2orf81A6NN90 581 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 CD160O95971 181 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 HSPA8P11142 646 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 CR2P20023 1033 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 OGNP20774 298 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 CDK9P50750 372 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 HK3P52790 923 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 UFM1P61960 85 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 ESRRGP62508 458 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 TXNL4AP83876 142 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 GALNT1Q10472 559 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 MERTKQ12866 999 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 MAPRE2Q15555 327 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 CTSL3PQ5NE16 218 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 KIAA1841Q6NSI8 718 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 WFDC5Q8TCV5 224 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 ADNPQ9H2P0 1102 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 NDUFAF1Q9Y375 327 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 PCDHB9Q9Y5E1 797 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 DGKBQ9Y6T7 804 aa16.35■□□□□ 0.21
CCDC88B-210ENST00000494566 PENKP01210 267 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 HMGA1P17096 107 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 CA5AP35218 305 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 SUOXP51687 545 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 TAF12Q16514 161 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 RBBP7Q16576 425 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 AARS2Q5JTZ9 985 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 CXorf57Q6NSI4 855 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 AFTPHQ6ULP2 937 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 PHYKPLQ8IUZ5 450 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 PDZD8Q8NEN9 1154 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 STAG3L4Q8TBR4 150 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 TFAP2CQ92754 450 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 KIAA1191Q96A73 305 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 LINGO1Q96FE5 620 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 PPM1MQ96MI6 270 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 PLK2Q9NYY3 685 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 AASSQ9UDR5 926 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 EIF2B4Q9UI10 523 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 FADS3Q9Y5Q0 445 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 KERAO60938 352 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 ZBTB11O95625 1053 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 PSMA4P25789 261 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 SLC26A3P40879 764 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 RAD51Q06609 339 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 KANK2Q63ZY3 851 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 ELMSAN1Q6PJG2 1045 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 UTS2BQ765I0 119 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 ERMP1Q7Z2K6 904 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 SYVN1Q86TM6 617 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 PLEKHG4BQ96PX9 1271 aa16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 TFB2MQ9H5Q4 396 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-210ENST00000494566 ANKRD66B4E2M5 251 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 H7C4K7 107 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 F11P03951 625 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 POLR2IP36954 125 aaKnown RBP16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 MTPNP58546 118 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 TAF1AQ15573 450 aaPredicted RBP16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 IMPG1Q17R60 797 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 KCTD8Q6ZWB6 473 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 SLC43A3Q8NBI5 491 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 STON2Q8WXE9 905 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 EID2BQ96D98 161 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 ZNF599Q96NL3 588 aa16.33■□□□□ 0.21
CCDC88B-210ENST00000494566 STX7O15400 261 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 TBL1XO60907 577 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 KATNA1O75449 491 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 CLDN11O75508 207 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 LPOP22079 712 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 IL10P22301 178 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 FASP25445 335 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms