RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TCEA2Q15560 299 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 MAMDC4Q6UXC1 1216 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 RD3Q7Z3Z2 195 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PHC3Q8NDX5 983 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PAWRQ96IZ0 340 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TPD52L3Q96J77 140 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 COPS8Q99627 209 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TNKS2Q9H2K2 1166 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TRIM45Q9H8W5 580 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 A0A1B0GVM2 712 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TCAF2A6NFQ2 919 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 NEDD8-MDP1E9PL57 170 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM72CH0Y354 149 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 H3BMM5 538 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 MLYCDO95822 493 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 UGT2B4P06133 528 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 COL6A2P12110 1019 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PROZP22891 400 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 S100A3P33764 101 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PPM1AP35813 382 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ACSM2AQ08AH3 577 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TNFAIP8L3Q5GJ75 292 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM72AQ5TYM5 149 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ACSM2BQ68CK6 577 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM72DQ6L9T8 149 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 NIPAL1Q6NVV3 410 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 AGMOQ6ZNB7 445 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ZNF621Q6ZSS3 439 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ADAMTSL2Q86TH1 951 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM72BQ86X60 149 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TMIGD2Q96BF3 282 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 SIGLEC10Q96LC7 697 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TMEM209Q96SK2 561 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ZFYVE1Q9HBF4 777 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 FAIMQ9NVQ4 179 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PDE10AQ9Y233 779 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 WBP11Q9Y2W2 641 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 UNCXA6NJT0 531 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TBX1O43435 398 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 NDUFB5O43674 189 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 CHI3L1P36222 383 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ACADVLP49748 655 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 RPL38P63173 70 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PNPT1Q8TCS8 783 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 RPL10LQ96L21 214 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 KCNK13Q9HB14 408 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 USP29Q9HBJ7 922 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 CAPN10Q9HC96 672 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 SRRDQ9UH36 339 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ZNF221Q9UK13 617 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.16■□□□□ 0.188e-8■■■□□ 16.5
CCDC88B-209ENST00000494080 PRELID1Q9Y255 219 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 FCF1Q9Y324 198 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 NPEPPSL1A6NEC2 478 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 SLC38A8A6NNN8 435 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 J3KR12 359 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 GOT2P00505 430 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 FTH1P02794 183 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 IDO1P14902 403 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 HTR7P34969 479 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 MTHFRP42898 656 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 CXCR3P49682 368 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 MAD2L1Q13257 205 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 SLAIN1Q8ND83 568 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 PTCD2Q8WV60 388 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 MYO19Q96H55 970 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 ARHGAP39Q9C0H5 1083 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 ALG2Q9H553 416 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 CD320Q9NPF0 282 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 MIEF1Q9NQG6 463 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 PSME2Q9UL46 239 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 CPQQ9Y646 472 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 GPR32O75388 356 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 CATP04040 527 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 KCNQ1P51787 676 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 NDST2P52849 883 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 SEMG2Q02383 582 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 KLHL17Q6TDP4 642 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 SMG8Q8ND04 991 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 FCRL5Q96RD9 977 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 ST14Q9Y5Y6 855 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 LRP5O75197 1615 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 MYADML2A6NDP7 307 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 PRR23D1E9PI22 279 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 IFRD1O00458 451 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 NTRK1P04629 796 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 PRR23D2P0DMB1 279 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 MLLT6P55198 1093 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 PRKCQQ04759 706 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 TRIQKQ629K1 86 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 P2RY8Q86VZ1 359 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 ZNF280BQ86YH2 543 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 RASAL3Q86YV0 1011 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 HIPK1Q86Z02 1210 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 CPSF7Q8N684 471 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 TRMOQ9BU70 441 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 MAGEH1Q9H213 219 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 EBF1Q9UH73 591 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 CDC14AQ9UNH5 594 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 PSAT1Q9Y617 370 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms