RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CERS2Q96G23 380 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 GAREM1Q9H706 876 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 CARS2Q9HA77 564 aaKnown RBP10.17□□□□□ -0.78
SKA1-204ENST00000488454 MRPL40Q9NQ50 206 aaKnown RBP10.17□□□□□ -0.78
SKA1-204ENST00000488454 FSCN3Q9NQT6 498 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 GPR27Q9NS67 375 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 IARS2Q9NSE4 1012 aaKnown RBP10.17□□□□□ -0.78
SKA1-204ENST00000488454 IL1RAPL1Q9NZN1 696 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 ZFATQ9P243 1243 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 ATXN10Q9UBB4 475 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 RAPGEFL1Q9UHV5 662 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 TMPRSS11EQ9UL52 423 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 SLC17A4Q9Y2C5 497 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 OAS3Q9Y6K5 1087 aaKnown RBP10.17□□□□□ -0.78
SKA1-204ENST00000488454 DGKBQ9Y6T7 804 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 CACNA1HO95180 2353 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 GON4LQ3T8J9 2241 aa10.17□□□□□ -0.78
SKA1-204ENST00000488454 QSOX1O00391 747 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 KMOO15229 486 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 NUAK1O60285 661 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 OR56A5P0C7T3 313 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 PRSS56P0CW18 603 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 VCLP18206 1134 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 OGNP20774 298 aaKnown RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 ARNTP27540 789 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 ECHS1P30084 290 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 STX2P32856 288 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 RXRGP48443 463 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 PMS2P54278 862 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 BNC1Q01954 994 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 SUZ12Q15022 739 aaKnown RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 ELOCQ15369 112 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 SF3A2Q15428 464 aaKnown RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 KYNUQ16719 465 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 TPRG1LQ5T0D9 272 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 ZNF470Q6ECI4 717 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 TCEAL6Q6IPX3 200 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 CYS1Q717R9 158 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 TRMT10CQ7L0Y3 403 aaKnown RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 DET1Q7L5Y6 550 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 LDB1Q86U70 411 aaPredicted RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 LRRTM4Q86VH4 590 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 LRRC6Q86X45 466 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 CILP2Q8IUL8 1156 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 TRAPPC5Q8IUR0 188 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 PHACTR4Q8IZ21 702 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 DCLK2Q8N568 766 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 RASGEF1AQ8N9B8 481 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 OR1E3Q8WZA6 343 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 TCEAL3Q969E4 200 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 WDR83Q9BRX9 315 aaKnown RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 TSSK1BQ9BXA7 367 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 PARD6BQ9BYG5 372 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 CLPBQ9H078 707 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 CCDC68Q9H2F9 335 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 LRRC4CQ9HCJ2 640 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 FGF22Q9HCT0 170 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 INTS10Q9NVR2 710 aaKnown RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 NSMCE4AQ9NXX6 385 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 MOCS1Q9NZB8 636 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 MARCH4Q9P2E8 410 aaPredicted RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 TXNDC16Q9P2K2 825 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 SPASTQ9UBP0 616 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 APOBEC3BQ9UH17 382 aaKnown RBP10.16□□□□□ -0.78
SKA1-204ENST00000488454 FBXO5Q9UKT4 447 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 SUFUQ9UMX1 484 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 GPR34Q9UPC5 381 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 DOLKQ9UPQ8 538 aa10.16□□□□□ -0.78
SKA1-204ENST00000488454 A0A1B0GTQ1 180 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 UBA6A0AVT1 1052 aaPredicted RBP10.15□□□□□ -0.78
SKA1-204ENST00000488454 NEMP2A6NFY4 417 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 PRMT5O14744 637 aaPredicted RBP10.15□□□□□ -0.78
SKA1-204ENST00000488454 KCNJ13O60928 360 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 AP2A2O94973 939 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 FAM153BP0C7A2 387 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 NME1P15531 152 aaKnown RBP10.15□□□□□ -0.78
SKA1-204ENST00000488454 CA5AP35218 305 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 CCT8P50990 548 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 VSNL1P62760 191 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 ILF3Q12906 894 aaKnown RBP eCLIP10.15□□□□□ -0.78
SKA1-204ENST00000488454 CTBP1Q13363 440 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 INSCQ1MX18 579 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 ZNF423Q2M1K9 1284 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 FAM153CQ494X1 144 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 MAP9Q49MG5 647 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 KHDC1Q4VXA5 237 aaKnown RBP10.15□□□□□ -0.78
SKA1-204ENST00000488454 PYCR3Q53H96 274 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 PRRT3Q5FWE3 981 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 TEDDM1Q5T9Z0 273 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 PTRHD1Q6GMV3 140 aaKnown RBP10.15□□□□□ -0.78
SKA1-204ENST00000488454 ZNF449Q6P9G9 518 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 TRMT10BQ6PF06 316 aaKnown RBP10.15□□□□□ -0.78
SKA1-204ENST00000488454 CRTC3Q6UUV7 619 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 PACS1Q6VY07 963 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 PRR23CQ6ZRP0 262 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 KIAA0408Q6ZU52 694 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 CHST15Q7LFX5 561 aaPredicted RBP10.15□□□□□ -0.78
SKA1-204ENST00000488454 ASCL5Q7RTU5 278 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 CTAGE3PQ8IX95 158 aa10.15□□□□□ -0.78
SKA1-204ENST00000488454 GSPT2Q8IYD1 628 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms