RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GFERP55789 205 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 RWDD2BP57060 319 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 EIF3EP60228 445 aaKnown RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 LY6DQ14210 128 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 CLCA4Q14CN2 919 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 SEPT7Q16181 437 aaKnown RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 SNAP47Q5SQN1 464 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 DDHD1Q8NEL9 900 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 CCDC110Q8TBZ0 833 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 JPH3Q8WXH2 748 aaPredicted RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 NKD1Q969G9 470 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 AHCYL2Q96HN2 611 aaKnown RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 BAG1Q99933 345 aaPredicted RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 UCK1Q9HA47 277 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 R3HDM2Q9Y2K5 976 aaKnown RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 PCDHGA4Q9Y5G9 962 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 BSNQ9UPA5 3926 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 GLYATL1P3A0A0U1RQE8 302 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 TCRBV7S2A1N4TA0A589 114 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 B4E171 279 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 KCNN4O15554 427 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 SGTAO43765 313 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 SLC2A4P14672 509 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 TSPAN7P41732 249 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 MAPK9P45984 424 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 GEMP55040 296 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 KLF1Q13351 362 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-204ENST00000475218 LINC00303Q3SY05 128 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 GPRC6AQ5T6X5 926 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 AGAP9Q5VTM2 703 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 ANKS6Q68DC2 871 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 WASH2PQ6VEQ5 465 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 TMEM26Q6ZUK4 368 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 SH3KBP1Q96B97 665 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 CALR3Q96L12 384 aaKnown RBP13.86□□□□□ -0.19
UPF3A-204ENST00000475218 DDA1Q9BW61 102 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 APMAPQ9HDC9 416 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 WASH6PQ9NQA3 447 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 SMOXQ9NWM0 555 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 SIDT1Q9NXL6 827 aaKnown RBP13.86□□□□□ -0.19
UPF3A-204ENST00000475218 AKAP7Q9P0M2 348 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-204ENST00000475218 COL6A6A6NMZ7 2263 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 MACROD2A1Z1Q3 448 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 C9P02748 559 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 TYRP1P17643 537 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 CD82P27701 267 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 CSTF2P33240 577 aaKnown RBP eCLIP13.86□□□□□ -0.19
UPF3A-204ENST00000475218 XIAPP98170 497 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 DMPKQ09013 629 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 FAM129CQ86XR2 697 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 TRAPPC5Q8IUR0 188 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 CDKL3Q8IVW4 592 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-204ENST00000475218 EXD3Q8N9H8 876 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 GPR150Q8NGU9 434 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 SPATA13Q96N96 652 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 FSD1LQ9BXM9 530 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 SLC40A1Q9NP59 571 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 SLC39A1Q9NY26 324 aa13.86□□□□□ -0.19
UPF3A-204ENST00000475218 EIF4E1BA6NMX2 242 aaKnown RBP13.85□□□□□ -0.19
UPF3A-204ENST00000475218 STMND1H3BQB6 276 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 ANXA9O76027 345 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 FTCDO95954 541 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 LEPRP48357 1165 aaKnown RBP13.85□□□□□ -0.19
UPF3A-204ENST00000475218 NAP1L1P55209 391 aaKnown RBP13.85□□□□□ -0.19
UPF3A-204ENST00000475218 CYP4F2P78329 520 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 MC2RQ01718 297 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 GPR18Q14330 331 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 SPARCL1Q14515 664 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 TAF1AQ15573 450 aaPredicted RBP13.85□□□□□ -0.19
UPF3A-204ENST00000475218 TAF1BQ53T94 588 aaPredicted RBP13.85□□□□□ -0.19
UPF3A-204ENST00000475218 CCDC181Q5TID7 509 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 ZDHHC20Q5W0Z9 365 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 KCTD11Q693B1 232 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 OR4K2Q8NGD2 314 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 OR13C4Q8NGS5 318 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 GDAP1Q8TB36 358 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 RSC1A1Q92681 617 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 RTP4Q96DX8 246 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 SGF29Q96ES7 293 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 CTRCQ99895 268 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.85□□□□□ -0.19
UPF3A-204ENST00000475218 STN1Q9H668 368 aaKnown RBP13.85□□□□□ -0.19
UPF3A-204ENST00000475218 WDR70Q9NW82 654 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 KLHL3Q9UH77 587 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 FKBPLQ9UIM3 349 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 CAPN6Q9Y6Q1 641 aa13.85□□□□□ -0.19
UPF3A-204ENST00000475218 OR2AG2A6NM03 316 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 AGAP14A8MT82 685 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 PDZK1P1A8MUH7 402 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 POP7O75817 140 aaKnown RBP13.84□□□□□ -0.19
UPF3A-204ENST00000475218 ZNF140P52738 457 aaPredicted RBP13.84□□□□□ -0.19
UPF3A-204ENST00000475218 GDF10P55107 478 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 C19orf57Q0VDD7 668 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 NFE2L1Q14494 772 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 MANEAQ5SRI9 462 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 LDLRAP1Q5SW96 308 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 TMEM164Q5U3C3 297 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 ITPRIPL1Q6GPH6 555 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 DARS2Q6PI48 645 aaKnown RBP13.84□□□□□ -0.19
UPF3A-204ENST00000475218 TIPARPQ7Z3E1 657 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms