RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TDRKHQ9Y2W6 561 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 hCG_2014768A0A024R1R8 64 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 PITPNM1O00562 1244 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 MAGEC1O60732 1142 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 E2F6O75461 281 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 LAG3P18627 525 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 CCR2P41597 374 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 TGFBIQ15582 683 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 SWT1Q5T5J6 900 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 RD3Q7Z3Z2 195 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 SYVN1Q86TM6 617 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 CDK5RAP1Q96SZ6 601 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 COPS8Q99627 209 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 PKP2Q99959 881 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 GSTO2Q9H4Y5 243 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 SQORQ9Y6N5 450 aa13.58□□□□□ -0.24
CCDC88A-211ENST00000471947 DRGXA6NNA5 263 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 SYCE1LA8MT33 242 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 SLCO1B7G3V0H7 640 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF195O14628 629 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF23P17027 643 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 POLR2EP19388 210 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 HLA-FP30511 346 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 CPOXP36551 454 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 ETV3P41162 512 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 SNRPD1P62314 119 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 MRPL58Q14197 206 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 ATP13A5Q4VNC0 1218 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 SYTL1Q8IYJ3 562 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 SLC39A11Q8N1S5 342 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 TUBGCP5Q96RT8 1024 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 PKD2L2Q9NZM6 624 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 B4GALT6Q9UBX8 382 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 DGKBQ9Y6T7 804 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 TRBV23OR9-2A0A075B6M9 112 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 LOC285095A0A1B0GVY8 99 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 HSPA8P11142 646 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 COL6A2P12110 1019 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 AQP1P29972 269 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 RING1Q06587 406 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 WLSQ5T9L3 541 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 GCNT7Q6ZNI0 430 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 DHFR2Q86XF0 187 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 PTCD2Q8WV60 388 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 CANT1Q8WVQ1 401 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 SELENOMQ8WWX9 145 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 ELOVL6Q9H5J4 265 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 ZBTB26Q9HCK0 441 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 A0A0G2JMZ2 1700 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 TRIM43BA6NCK2 446 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 WDR47O94967 919 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 PCDH8O95206 1070 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 FRG1Q14331 258 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 ZBTB49Q6ZSB9 765 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 GALNT10Q86SR1 603 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 LILRA3Q8N6C8 439 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 TRIML2Q8N7C3 387 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 RDH11Q8TC12 318 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 TRIM43Q96BQ3 446 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 PLD4Q96BZ4 506 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 IL26Q9NPH9 171 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 MKS1Q9NXB0 559 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 POLG2Q9UHN1 485 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 SLC8A2Q9UPR5 921 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 LRCH1Q9Y2L9 728 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 RNF11Q9Y3C5 154 aa13.57□□□□□ -0.24
CCDC88A-211ENST00000471947 TMEM189-UBE2V1I3L0A0 370 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 LCP2Q13094 533 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 FNDC3BQ53EP0 1204 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 NAIF1Q69YI7 327 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 ANKRD26P1Q6NSI1 321 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 PQLC1Q8N2U9 271 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 OR4F6Q8NGB9 312 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 APOLD1Q96LR9 279 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 KLF16Q9BXK1 252 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 ALG2Q9H553 416 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 KIAA1522Q9P206 1035 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 SYNDIG1LA6NDD5 238 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 RFXAPO00287 272 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 ALDOCP09972 364 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 BPIP17213 487 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 MAP4P27816 1152 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 LBX1P52954 281 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 LAPTM4AQ15012 233 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 TCEAL5Q5H9L2 206 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 AARS2Q5JTZ9 985 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 NKAPQ8N5F7 415 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 GPR26Q8NDV2 337 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 FUBP1Q96AE4 644 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 TSC22D3Q99576 134 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 MGME1Q9BQP7 344 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 SLC25A23Q9BV35 468 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 FAM126AQ9BYI3 521 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 PCDH12Q9NPG4 1184 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF212Q9UDV6 495 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 SUFUQ9UMX1 484 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 AP4S1Q9Y587 144 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 PRORSD1PA6NEY8 169 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms