RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SH3PXD2AQ5TCZ1 1133 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 IQSEC1Q6DN90 963 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SYCE2Q6PIF2 218 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SLC38A4Q969I6 547 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 GPR20Q99678 358 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CIB1Q99828 191 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 STON1Q9Y6Q2 735 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 FASP25445 335 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 NDUFV1P49821 464 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SUZ12Q15022 739 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 EGFLAMQ63HQ2 1017 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 NAPEPLDQ6IQ20 393 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CUZD1Q86UP6 607 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SLC22A9Q8IVM8 553 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 RGL4Q8IZJ4 473 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 MYO1HQ8N1T3 1032 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 HDDC3Q8N4P3 179 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SEPT1Q8WYJ6 367 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 NDFIP2Q9NV92 336 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SELENONQ9NZV5 590 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 LSM2Q9Y333 95 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 HES2Q9Y543 173 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 TIMM22Q9Y584 194 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 A0A087X1B8 175 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 EI24O14681 340 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 XPO1O14980 1071 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CAPN5O15484 640 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 ZMPSTE24O75844 475 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 PIAS1O75925 651 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 KCNK2O95069 426 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 RAP2AP10114 183 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 IL12AP29459 219 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 GZMKP49863 264 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CELF3Q5SZQ8 465 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 TAS2R42Q7RTR8 314 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 GPR149Q86SP6 731 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SP7Q8TDD2 431 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CSGALNACT1Q8TDX6 532 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CCDC124Q96CT7 223 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 KIFC3Q9BVG8 833 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 MINDY3Q9H8M7 445 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 ACOXLQ9NUZ1 547 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 MRPS18AQ9NVS2 196 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 GID8Q9NWU2 228 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 TNFRSF10DQ9UBN6 386 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 RIPK3Q9Y572 518 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 ZSWIM8A7E2V4 1837 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 AGAP5A6NIR3 686 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CR2P20023 1033 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 TNFSF9P41273 254 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 KPNA1P52294 538 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 IYDQ6PHW0 289 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 AFTPHQ6ULP2 937 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 BHMTQ93088 406 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 WNT8BQ93098 351 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 KIAA1191Q96A73 305 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SLC39A13Q96H72 371 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 C3orf30Q96M34 536 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SYTL2Q9HCH5 934 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 NGRNQ9NPE2 291 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 OAZ3Q9UMX2 235 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 FER1L6Q2WGJ9 1857 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 S1PR4O95977 384 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 HNRNPCP07910 306 aaKnown RBP eCLIP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 HMBSP08397 361 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 NEK2P51955 445 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PKNOX1P55347 436 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ECT2LQ008S8 904 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM207Q6UWW9 146 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CAMKMTQ7Z624 323 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 BTLAQ7Z6A9 289 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 NLRP8Q86W28 1048 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TRIML2Q8N7C3 387 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TAMM41Q96BW9 452 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CEP295NLQ96MC4 621 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 MUS81Q96NY9 551 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 OR2A14Q96R47 310 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 SMAD5Q99717 465 aaKnown RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CCDC90BQ9GZT6 254 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 MARCOQ9UEW3 520 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 KCND3Q9UK17 655 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 FBXO10Q9UK96 956 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 TSPAN16Q9UKR8 245 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 EIF3FO00303 357 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PMPCBO75439 489 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 SHMT2P34897 504 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 P2RX3P56373 397 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 EMX1Q04741 257 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 LCP2Q13094 533 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 ASAH1Q13510 395 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 GALNT3Q14435 633 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PCBP2Q15366 365 aaKnown RBP eCLIP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CCDC85BQ15834 202 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PCSK7Q16549 785 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 CTU2Q2VPK5 515 aaKnown RBP5.29□□□□□ -1.56
SYNE1-220ENST00000471834 REP15Q6BDI9 236 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 MSANTD2Q6P1R3 559 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 XKRXQ6PP77 449 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 NPNTQ6UXI9 565 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms