RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 PLIN4Q96Q06 1357 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 WASHC1A8K0Z3 465 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 WASH3PC4AMC7 463 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 NOL4O94818 638 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 EOMESO95936 686 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ZNF823P16415 610 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 GABRB2P47870 512 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 SLC25A3Q00325 362 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 HSF2Q03933 536 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 SLC13A2Q13183 592 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 COL9A3Q14050 684 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 UBAP2LQ14157 1087 aaKnown RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 ERICH5Q6P6B1 374 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 RHBDF2Q6PJF5 856 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 WASH2PQ6VEQ5 465 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 POLNQ7Z5Q5 900 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 LIX1Q8N485 282 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 CLHC1Q8NHS4 586 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 SHC3Q92529 594 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 AZIN2Q96A70 460 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 TDRD1Q9BXT4 1180 aaKnown RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 LRTM1Q9HBL6 345 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ABCB10Q9NRK6 738 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ADGRE2Q9UHX3 823 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 CLEC4AQ9UMR7 237 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 GNEQ9Y223 722 aaKnown RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 VWA7Q9Y334 891 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ATRNL1Q5VV63 1379 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 NCANO14594 1321 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 KLRG2A4D1S0 409 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 BANF1O75531 89 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 SNX4O95219 450 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 HNRNPLP14866 589 aaKnown RBP eCLIP8.63□□□□□ -1.03
HPS4-209ENST00000466781 CD247P20963 164 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ATP5A1P25705 553 aaKnown RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 MLLT3P42568 568 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 DHPSP49366 369 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 VEGFBP49765 207 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 CDK9P50750 372 aaKnown RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 SEMA5AQ13591 1074 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 C5orf22Q49AR2 442 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 VPS26BQ4G0F5 336 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 UBXN11Q5T124 520 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 FAM131AQ6UXB0 335 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 FAM92BQ6ZTR7 304 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 DHDDSQ86SQ9 333 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 PACS2Q86VP3 889 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 KBTBD2Q8IY47 623 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 POC5Q8NA72 575 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 TSTD1Q8NFU3 115 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 PLD4Q96BZ4 506 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 RBM18Q96H35 190 aaKnown RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 SCLYQ96I15 445 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ZNF184Q99676 751 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 NIFKQ9BYG3 293 aaKnown RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 C9J4A7 227 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 PSMD9O00233 223 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 PGDP52209 483 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 MAPK12P53778 367 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 CDH4P55283 916 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 MC1RQ01726 317 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ENPEPQ07075 957 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 SNAPC1Q16533 368 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 HECTD2Q5U5R9 776 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 RNF43Q68DV7 783 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ATG14Q6ZNE5 492 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 C10orf107Q8IVU9 208 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 OR2L3Q8NG85 312 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 PNPT1Q8TCS8 783 aaKnown RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 STK32AQ8WU08 396 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 XAGE5Q8WWM1 108 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 S100ZQ8WXG8 99 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 MFSD14AQ96MC6 490 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 PLEKHG4BQ96PX9 1271 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 PCBD2Q9H0N5 130 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 GLOD4Q9HC38 313 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 NUDT4Q9NZJ9 180 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 CALML5Q9NZT1 146 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 MED31Q9Y3C7 131 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 MAP4K5Q9Y4K4 846 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 hCG_1818297A0A087WSY0 165 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 DHRS12A0PJE2 317 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 CAPN14A8MX76 684 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 H3BQF6 201 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 KERAO60938 352 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 OR4Q2P0C623 313 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 NRG3P56975 720 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 RGS8P57771 180 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 TLR1Q15399 786 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 B3GNT6Q6ZMB0 384 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 ZNF433Q8N7K0 673 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 PSMA8Q8TAA3 256 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 BAP1Q92560 729 aa8.63□□□□□ -1.03
HPS4-209ENST00000466781 MAFBQ9Y5Q3 323 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 COL16A1Q07092 1604 aaPredicted RBP8.63□□□□□ -1.03
HPS4-209ENST00000466781 LOC110117498-PIK3R3F6TDL0 507 aa8.62□□□□□ -1.03
HPS4-209ENST00000466781 WFS1O76024 890 aa8.62□□□□□ -1.03
HPS4-209ENST00000466781 CLDN9O95484 217 aa8.62□□□□□ -1.03
HPS4-209ENST00000466781 ARF4P18085 180 aaPredicted RBP8.62□□□□□ -1.03
HPS4-209ENST00000466781 CTSKP43235 329 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms