RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 GLOD4Q9HC38 313 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 DDX28Q9NUL7 540 aaKnown RBP11.59□□□□□ -0.55
CPSF3-202ENST00000460593 RBM22Q9NW64 420 aaKnown RBP eCLIP11.59□□□□□ -0.55
CPSF3-202ENST00000460593 FAM92AA1XBS5 289 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 SUPT3HB4E1H0 165 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 HOXC11O43248 304 aaPredicted RBP11.59□□□□□ -0.55
CPSF3-202ENST00000460593 SLC22A3O75751 556 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 ALOX12P18054 663 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 ITIH1P19827 911 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 CXCL9Q07325 125 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 PAQR9Q6ZVX9 377 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 CALML6Q8TD86 181 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 NT5C3BQ969T7 300 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 C17orf80Q9BSJ5 609 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 IKZF5Q9H5V7 419 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 PLSCR3Q9NRY6 295 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 RASSF1Q9NS23 344 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 RGS18Q9NS28 235 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 ASB1Q9Y576 335 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 PCDHGA10Q9Y5H3 936 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 LINC00854A0A1B0GVQ3 168 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 CCNKO75909 580 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 ANGPTL1O95841 491 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 MTHFD2P13995 350 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 CLK3P49761 638 aaKnown RBP11.59□□□□□ -0.55
CPSF3-202ENST00000460593 CDK5R2Q13319 367 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 RCAN2Q14206 197 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 KIAA0319Q5VV43 1072 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 TTC23Q5W5X9 447 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 KANK2Q63ZY3 851 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 CLEC20AQ6ZU45 233 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 BEND5Q7L4P6 421 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 TMEM199Q8N511 208 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 RHOXF1Q8NHV9 184 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 HSFY1Q96LI6 401 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 CDK5RAP1Q96SZ6 601 aaKnown RBP11.59□□□□□ -0.55
CPSF3-202ENST00000460593 RIBC2Q9H4K1 309 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 WDCPQ9H6R7 721 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 ADPRHL2Q9NX46 363 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 FBXW11Q9UKB1 542 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 ADAMTS5Q9UNA0 930 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 SCN4AP35499 1836 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 IDH3BO43837 385 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 DFNA5O60443 496 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 UPK1BO75841 260 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 DIRAS1O95057 198 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 EPHA2P29317 976 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 CCDC58Q4VC31 144 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 FAM98BQ52LJ0 330 aaKnown RBP11.58□□□□□ -0.56
CPSF3-202ENST00000460593 FKBP1CQ5VVH2 108 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 BNIPLQ7Z465 357 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 B3GNT8Q7Z7M8 397 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 ELMOD1Q8N336 334 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 ATPAF2Q8N5M1 289 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 FNDC5Q8NAU1 212 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 B3GALNT2Q8NCR0 500 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 OR10A6Q8NH74 314 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 TP53INP1Q96A56 240 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 LGALS12Q96DT0 336 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 L3HYPDHQ96EM0 354 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 KLHL5Q96PQ7 755 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 ZNF300Q96RE9 604 aaPredicted RBP11.58□□□□□ -0.56
CPSF3-202ENST00000460593 COLEC11Q9BWP8 271 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 OSBPL10Q9BXB5 764 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 ASPSCR1Q9BZE9 553 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 RNF39Q9H2S5 420 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 FBXO8Q9NRD0 319 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 QPCTLQ9NXS2 382 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.58□□□□□ -0.56
CPSF3-202ENST00000460593 FAM50BQ9Y247 325 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 PRKD3O94806 890 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 PGLSO95336 258 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 MLYCDO95822 493 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 ANXA6P08133 673 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 RAP2AP10114 183 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 UMPSP11172 480 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 CD1DP15813 335 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 WNT3AP56704 352 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 ARPC4P59998 168 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 SOX4Q06945 474 aaPredicted RBP11.58□□□□□ -0.56
CPSF3-202ENST00000460593 CLCA4Q14CN2 919 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 AASDHQ4L235 1098 aaPredicted RBP11.58□□□□□ -0.56
CPSF3-202ENST00000460593 FBXO47Q5MNV8 452 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 ZNF549Q6P9A3 640 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 PHACTR4Q8IZ21 702 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 DPF3Q92784 378 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 TXNDC15Q96J42 360 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 FAM49AQ9H0Q0 323 aaPredicted RBP11.58□□□□□ -0.56
CPSF3-202ENST00000460593 MAGEE1Q9HCI5 957 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 ZNF225Q9UK10 706 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 AGO1Q9UL18 857 aaKnown RBP11.58□□□□□ -0.56
CPSF3-202ENST00000460593 PCDHB14Q9Y5E9 798 aa11.58□□□□□ -0.56
CPSF3-202ENST00000460593 MATN4O95460 622 aa11.57□□□□□ -0.56
CPSF3-202ENST00000460593 GSNP06396 782 aa11.57□□□□□ -0.56
CPSF3-202ENST00000460593 CHRNB1P11230 501 aa11.57□□□□□ -0.56
CPSF3-202ENST00000460593 PAMP19021 973 aa11.57□□□□□ -0.56
CPSF3-202ENST00000460593 PPP5CP53041 499 aa11.57□□□□□ -0.56
CPSF3-202ENST00000460593 PPP2R2BQ00005 443 aa11.57□□□□□ -0.56
CPSF3-202ENST00000460593 IHHQ14623 411 aa11.57□□□□□ -0.56
CPSF3-202ENST00000460593 SNAP47Q5SQN1 464 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms