RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 DOCK1Q14185 1865 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 FFAR2O15552 330 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 HNRNPH1P31943 449 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 GNPDA1P46926 289 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 KLC1Q07866 573 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 DHCR24Q15392 516 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 SLC8B1Q6J4K2 584 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ZBTB49Q6ZSB9 765 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 LCN9Q8WX39 176 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 DACT3Q96B18 629 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 IMP4Q96G21 291 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 APOLD1Q96LR9 279 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 RNF145Q96MT1 663 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 P2RY13Q9BPV8 354 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 KIFC1Q9BW19 673 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 NSUN3Q9H649 340 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF358Q9NW07 568 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 CITO14578 2027 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 PIK3R1P27986 724 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 SSR2P43308 183 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 PTPRCAPQ14761 206 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 INO80DQ53TQ3 878 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ZCCHC8Q6NZY4 707 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 R3HCC1LQ7Z5L2 792 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ZC3HC1Q86WB0 502 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 NPWQ8N729 165 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 C12orf66Q96MD2 445 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 TSSK3Q96PN8 268 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 SCN3BQ9NY72 215 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 B4GALT6Q9UBX8 382 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 C2orf71A6NGG8 1288 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 SOCS5O75159 536 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PGLSO95336 258 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 GSTM1P09488 218 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PSME3P61289 254 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 DSC1Q08554 894 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CHIT1Q13231 466 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 TEAD4Q15561 434 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ENPP7Q6UWV6 458 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 MRPL43Q8N983 215 aaKnown RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ATG16L2Q8NAA4 619 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ITFG1Q8TB96 612 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 RCN3Q96D15 328 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ABHD8Q96I13 439 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PRICKLE1Q96MT3 831 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 TUBGCP5Q96RT8 1024 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 BTBD1Q9H0C5 482 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 TFB2MQ9H5Q4 396 aaKnown RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 LRTM1Q9HBL6 345 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 WDR6Q9NNW5 1121 aaKnown RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 KRCC1Q9NPI7 259 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 HCFC1R1Q9NWW0 138 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ZDHHC7Q9NXF8 308 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 EVPLQ92817 2033 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ADAM12O43184 909 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 LEFTY1O75610 366 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 SLC22A3O75751 556 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 SEC24AO95486 1093 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ACP5P13686 325 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 POU1F1P28069 291 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 GCNT7Q6ZNI0 430 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 DPY19L3Q6ZPD9 716 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CAND1Q86VP6 1230 aaKnown RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 TP53INP2Q8IXH6 220 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 NELL1Q92832 810 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CNBD2Q96M20 576 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 OR52E6Q96RD3 313 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 IL12RB2Q99665 862 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 UGT2B28Q9BY64 529 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ABCG4Q9H172 646 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CARS2Q9HA77 564 aaKnown RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CSNK1G1Q9HCP0 422 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 SAC3D1A6NKF1 404 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PRR5-ARHGAP8B1AHC4 643 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 HNRNPCL2B2RXH8 293 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 OR10H2O60403 315 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 OR4F21O95013 312 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 BLKP51451 505 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ARHGAP8P85298 464 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 DAB2P98082 770 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 SPATA19Q7Z5L4 167 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 TMEM25Q86YD3 366 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CLHC1Q8NHS4 586 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF641Q96N77 438 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 OLFM3Q96PB7 478 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PANX1Q96RD7 426 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PRKAG3Q9UGI9 489 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 KLHL3Q9UH77 587 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PACSIN3Q9UKS6 424 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PSMC3P17980 439 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ACTR1BP42025 376 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ACTR1AP61163 376 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 VWA5B1Q5TIE3 1220 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF549Q6P9A3 640 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF598Q86UK7 904 aaKnown RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PARGQ86W56 976 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 IGDCC3Q8IVU1 814 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CLDN19Q8N6F1 224 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF781Q8N8C0 355 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 BDH2Q9BUT1 245 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms