RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 NKX1-2Q9UD57 310 aaPredicted RBP20.86■□□□□ 0.93
PTPRF-207ENST00000436724 ARNTLO00327 626 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 NEMP1O14524 444 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 UBFD1O14562 309 aaKnown RBP20.86■□□□□ 0.93
PTPRF-207ENST00000436724 SPINT1O43278 529 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 EPHX1P07099 455 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 NSG1P42857 185 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 GPRC6AQ5T6X5 926 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 DET1Q7L5Y6 550 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 TREML1Q86YW5 311 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 L3HYPDHQ96EM0 354 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 OR52B2Q96RD2 323 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 RIOK2Q9BVS4 552 aaKnown RBP20.86■□□□□ 0.93
PTPRF-207ENST00000436724 UTP6Q9NYH9 597 aaKnown RBP20.86■□□□□ 0.93
PTPRF-207ENST00000436724 ATG2BQ96BY7 2078 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 PPP6CO00743 305 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 HDAC3O15379 428 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 GM2AP17900 193 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 WASP42768 502 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 HK3P52790 923 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 PDCD2Q16342 344 aaPredicted RBP20.85■□□□□ 0.93
PTPRF-207ENST00000436724 ITPRIPL2Q3MIP1 535 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 ZDHHC20Q5W0Z9 365 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 SEL1L3Q68CR1 1132 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 CHRDL2Q6WN34 429 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 LIPIQ6XZB0 460 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 MACC1Q6ZN28 852 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 MMAAQ8IVH4 418 aaKnown RBP20.85■□□□□ 0.93
PTPRF-207ENST00000436724 SUSD6Q92537 303 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 PTCD3Q96EY7 689 aaKnown RBP20.85■□□□□ 0.93
PTPRF-207ENST00000436724 NSUN5Q96P11 429 aaKnown RBP20.85■□□□□ 0.93
PTPRF-207ENST00000436724 STN1Q9H668 368 aaKnown RBP20.85■□□□□ 0.93
PTPRF-207ENST00000436724 SERPINA6P08185 405 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 ELFN1P0C7U0 828 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 EPHA3P29320 983 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 ERAP2Q6P179 960 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 CACUL1Q86Y37 369 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 HCAR2Q8TDS4 363 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 MIPEPQ99797 713 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 THAP10Q9P2Z0 257 aaPredicted RBP20.85■□□□□ 0.93
PTPRF-207ENST00000436724 COQ6Q9Y2Z9 468 aa20.85■□□□□ 0.93
PTPRF-207ENST00000436724 FADS2P1A8MWK0 482 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 PEX11AO75192 247 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 ACSBG2Q5FVE4 666 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 FBXL19Q6PCT2 694 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 CUZD1Q86UP6 607 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 FBXO39Q8N4B4 442 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 TMIEQ8NEW7 156 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 UCMAQ8WVF2 138 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 ESAMQ96AP7 390 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 MSLNLQ96KJ4 702 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 MTCH2Q9Y6C9 303 aa20.84■□□□□ 0.93
PTPRF-207ENST00000436724 IGLV3-16A0A075B6K0 115 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 E9PBE3 544 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 KLHL41O60662 606 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 HNRNPCL1O60812 293 aaKnown RBP20.83■□□□□ 0.93
PTPRF-207ENST00000436724 CCDC22O60826 627 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 ITGB7P26010 798 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 SERPINB5P36952 375 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 GRIA2P42262 883 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 AGTR2P50052 363 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 ACOX1Q15067 660 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 KHDC1Q4VXA5 237 aaKnown RBP20.83■□□□□ 0.93
PTPRF-207ENST00000436724 ZNF648Q5T619 568 aaPredicted RBP20.83■□□□□ 0.93
PTPRF-207ENST00000436724 HENMT1Q5T8I9 393 aaKnown RBP20.83■□□□□ 0.93
PTPRF-207ENST00000436724 TECPR1Q7Z6L1 1165 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 N4BP2L2Q92802 583 aaPredicted RBP20.83■□□□□ 0.93
PTPRF-207ENST00000436724 PRSS16Q9NQE7 514 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 PLXNA2O75051 1894 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 DENND4AQ7Z401 1863 aa20.83■□□□□ 0.93
PTPRF-207ENST00000436724 CAPN14A8MX76 684 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 PRR5-ARHGAP8B1AHC4 643 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 NFKBIAP25963 317 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 EEF1DP29692 281 aaKnown RBP20.83■□□□□ 0.92
PTPRF-207ENST00000436724 AKT1P31749 480 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 ARHGAP8P85298 464 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 ADGRE1Q14246 886 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 ZBTB2Q8N680 514 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 NSL1Q96IY1 281 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 MYCBPQ99417 103 aaPredicted RBP20.83■□□□□ 0.92
PTPRF-207ENST00000436724 CCDC106Q9BWC9 280 aa20.83■□□□□ 0.92
PTPRF-207ENST00000436724 CCDC189A1A4V9 331 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 SKAP2O75563 359 aaPredicted RBP20.82■□□□□ 0.92
PTPRF-207ENST00000436724 NCF2P19878 526 aaPredicted RBP20.82■□□□□ 0.92
PTPRF-207ENST00000436724 EIF2DP41214 584 aaKnown RBP20.82■□□□□ 0.92
PTPRF-207ENST00000436724 CCNG1P51959 295 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 DCDC1P59894 354 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 GPSM1Q86YR5 675 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 ULK4Q96C45 1275 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 TUBB6Q9BUF5 446 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 CADM1Q9BY67 442 aaKnown RBP20.82■□□□□ 0.92
PTPRF-207ENST00000436724 TTYH1Q9H313 450 aaPredicted RBP20.82■□□□□ 0.92
PTPRF-207ENST00000436724 RNPEPL1Q9HAU8 725 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 TCF7L2Q9NQB0 619 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 SPATS2LQ9NUQ6 558 aaKnown RBP20.82■□□□□ 0.92
PTPRF-207ENST00000436724 ASB1Q9Y576 335 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 LRRK1Q38SD2 2015 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 F5P12259 2224 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 SYCE1LA8MT33 242 aa20.82■□□□□ 0.92
PTPRF-207ENST00000436724 ENO1P06733 434 aaKnown RBP20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms