RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MROH9Q5TGP6 573 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 LRRC8EQ6NSJ5 796 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 IL27RAQ6UWB1 636 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 GCNT7Q6ZNI0 430 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 RD3Q7Z3Z2 195 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 PARGQ86W56 976 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 ZC3HC1Q86WB0 502 aaKnown RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 SLC41A1Q8IVJ1 513 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 BEND7Q8N7W2 519 aaPredicted RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 LPGAT1Q92604 370 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 TMEM159Q96B96 161 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 COX14Q96I36 57 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 ZIM3Q96PE6 472 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 CCM2Q9BSQ5 444 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 NUSAP1Q9BXS6 441 aaKnown RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 IQCGQ9H095 443 aaKnown RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 CYP4F12Q9HCS2 524 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 SARS2Q9NP81 518 aaKnown RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 SPATS2LQ9NUQ6 558 aaKnown RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 SENP1Q9P0U3 644 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 SLC39A10Q9ULF5 831 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 DOLKQ9UPQ8 538 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 TMEM98Q9Y2Y6 226 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 PCDHGA5Q9Y5G8 931 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 VCANP13611 3396 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 SDK1Q7Z5N4 2213 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 PRSS38A1L453 326 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 OR2AG2A6NM03 316 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 CXorf49A8MYA2 514 aaPredicted RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 VILLO15195 856 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 NUAK1O60285 661 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 LILRB5O75023 590 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 MTX2O75431 263 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 MPOP05164 745 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 MAPK9P45984 424 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 GNPDA1P46926 289 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 ARRB1P49407 418 aaPredicted RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 SRP54P61011 504 aaKnown RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 ILF3Q12906 894 aaKnown RBP eCLIP9.96□□□□□ -0.81
CD44-207ENST00000425428 LRP8Q14114 963 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 EFTUD2Q15029 972 aaKnown RBP eCLIP9.96□□□□□ -0.81
CD44-207ENST00000425428 SEPT7Q16181 437 aaKnown RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 KLC3Q6P597 504 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 CNSTQ6PJW8 725 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 ADGRG6Q86SQ4 1221 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 TBC1D1Q86TI0 1168 aaPredicted RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 TRIM74Q86UV6 250 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 AMZ2Q86W34 360 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 HID1Q8IV36 788 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 OR13H1Q8NG92 308 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 SKA2Q8WVK7 121 aaPredicted RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 ASZ1Q8WWH4 475 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 ELMO1Q92556 727 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 KCNJ9Q92806 393 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 ATOH1Q92858 354 aaPredicted RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 SGF29Q96ES7 293 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 BMFQ96LC9 184 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 FOPNLQ96NB1 174 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 TMEM109Q9BVC6 243 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 ZDHHC5Q9C0B5 715 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 CARS2Q9HA77 564 aaKnown RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 C11orf16Q9NQ32 467 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 PLSCR2Q9NRY7 297 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 ATXN10Q9UBB4 475 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 HCN4Q9Y3Q4 1203 aa9.96□□□□□ -0.81
CD44-207ENST00000425428 TDRD6O60522 2096 aaKnown RBP9.96□□□□□ -0.81
CD44-207ENST00000425428 IGLV3-16A0A075B6K0 115 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 SPTY2D1-AS1A0A0U1RR47 76 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 H0Y8X5 98 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 GPR39O43194 453 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 OR1I1O60431 355 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 SOD1P00441 154 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 SHBGP04278 402 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 PRSS56P0CW18 603 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 SLC2A4P14672 509 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 ZNF8P17098 575 aaPredicted RBP9.96□□□□□ -0.82
CD44-207ENST00000425428 DGKAP23743 735 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 PRLHRP49683 370 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 HNRNPKP61978 463 aaKnown RBP eCLIP9.96□□□□□ -0.82
CD44-207ENST00000425428 SEMA3AQ14563 771 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 BCL7AQ4VC05 210 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 HECTD2Q5U5R9 776 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 LAIR1Q6GTX8 287 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 CRTC3Q6UUV7 619 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 IQCKQ8N0W5 287 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 NKAPQ8N5F7 415 aaKnown RBP9.96□□□□□ -0.82
CD44-207ENST00000425428 RASGEF1AQ8N9B8 481 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 EPS8L3Q8TE67 593 aaKnown RBP9.96□□□□□ -0.82
CD44-207ENST00000425428 ANKRD7Q92527 254 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 INPP5DQ92835 1189 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 OR2M4Q96R27 311 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 SMC6Q96SB8 1091 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 GPR22Q99680 433 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 AARSD1Q9BTE6 412 aaKnown RBP9.96□□□□□ -0.82
CD44-207ENST00000425428 LGR4Q9BXB1 951 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 GSDMCQ9BYG8 508 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 EPB41L4BQ9H329 900 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 PLAC1Q9HBJ0 212 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 POPDC3Q9HBV1 291 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 GPAMQ9HCL2 828 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms