RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PRR30Q53SZ7 412 aaPredicted RBP7.95□□□□□ -1.14
VIM-202ENST00000421459 ZFYVE27Q5T4F4 411 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 ALKBH5Q6P6C2 394 aaKnown RBP7.95□□□□□ -1.14
VIM-202ENST00000421459 ABRAXAS1Q6UWZ7 409 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 MICALCLQ6ZW33 695 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 LRRTM4Q86VH4 590 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 TRAM1L1Q8N609 369 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 PLD5Q8N7P1 536 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 FATE1Q969F0 183 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 HDAC11Q96DB2 347 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 CXorf40BQ96DE9 158 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 IMP4Q96G21 291 aaKnown RBP7.95□□□□□ -1.14
VIM-202ENST00000421459 PPM1MQ96MI6 270 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 RNF157Q96PX1 679 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 NRTNQ99748 197 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 MAP3K3Q99759 626 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 ZNF670Q9BS34 389 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 ADGRE3Q9BY15 652 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 GPR63Q9BZJ6 419 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 EPB41L1Q9H4G0 881 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 ACTL8Q9H568 366 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 UCK1Q9HA47 277 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 CTTNBP2NLQ9P2B4 639 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 AMACRQ9UHK6 382 aa7.95□□□□□ -1.14
VIM-202ENST00000421459 CFAP20Q9Y6A4 193 aaKnown RBP7.95□□□□□ -1.14
VIM-202ENST00000421459 A1L4Q6 167 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 C3orf70A6NLC5 250 aaPredicted RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 VPS4BO75351 444 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 PMPCBO75439 489 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 POP7O75817 140 aaKnown RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 SERPINC1P01008 464 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 SERPING1P05155 500 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 CCNYL3P0C7X3 344 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 IDSP22304 550 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 COL8A1P27658 744 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 PBLDP30039 288 aaPredicted RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 PBX1P40424 430 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 PMS2P54278 862 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 IFI35P80217 286 aaPredicted RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 CDK18Q07002 472 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 PPIDQ08752 370 aaKnown RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 TUBB3Q13509 450 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 SEMA5AQ13591 1074 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 MESDQ14696 234 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 IQCB1Q15051 598 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 PDK2Q15119 407 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 GPR19Q15760 415 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 RPE65Q16518 533 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 CAPRIN2Q6IMN6 1127 aaKnown RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 DUS1LQ6P1R4 473 aaKnown RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 PRSS42Q7Z5A4 293 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 NT5DC3Q86UY8 548 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 ATCAYQ86WG3 371 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 PPP1R3BQ86XI6 285 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 TRAPPC5Q8IUR0 188 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 RAVER1Q8IY67 606 aaKnown RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 SLC25A41Q8N5S1 370 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 BEND7Q8N7W2 519 aaPredicted RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 SIDT2Q8NBJ9 832 aaKnown RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 SLC38A9Q8NBW4 561 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 GDAP1Q8TB36 358 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 CPT1CQ8TCG5 803 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 TADA1Q96BN2 335 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 ZDHHC12Q96GR4 267 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 BPIFA3Q9BQP9 254 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 TIMM29Q9BSF4 260 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 ZSCAN5AQ9BUG6 496 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 MFRPQ9BY79 579 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 MAGEE1Q9HCI5 957 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 POT1Q9NUX5 634 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 SAE1Q9UBE0 346 aaPredicted RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 PLEKHB1Q9UF11 243 aaPredicted RBP7.94□□□□□ -1.14
VIM-202ENST00000421459 NENFQ9UMX5 172 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 VPS4AQ9UN37 437 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 HYOU1Q9Y4L1 999 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 PCDHGA6Q9Y5G7 932 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 DOPEY2Q9Y3R5 2298 aa7.94□□□□□ -1.14
VIM-202ENST00000421459 LRRD1A4D1F6 860 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 GOLGA6L3A6NEY3 463 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 A6NL46 340 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 OR2AG2A6NM03 316 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 SMTNL1A8MU46 457 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 TOX3O15405 576 aaPredicted RBP7.93□□□□□ -1.14
VIM-202ENST00000421459 AGFG2O95081 481 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 LCA5LO95447 670 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 ATXN8OSP0DMR3 200 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 TNNT1P13805 278 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 MX2P20592 715 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 CD68P34810 354 aaPredicted RBP7.93□□□□□ -1.14
VIM-202ENST00000421459 CHRNA4P43681 627 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 DCDC1P59894 354 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 DYNLT1P63172 113 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 FANCCQ00597 558 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 MRPL49Q13405 166 aaKnown RBP7.93□□□□□ -1.14
VIM-202ENST00000421459 RAPSNQ13702 412 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 LAMB3Q13751 1172 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 NFE2L1Q14494 772 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 CHRNA6Q15825 494 aa7.93□□□□□ -1.14
VIM-202ENST00000421459 EIF2S3LQ2VIR3 472 aaKnown RBP7.93□□□□□ -1.14
VIM-202ENST00000421459 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms