RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CPA6Q8N4T0 437 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 UBR7Q8N806 425 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TWIST2Q8WVJ9 160 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 C11orf24Q96F05 449 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ZBED6CLQ96FA7 236 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 FUBP3Q96I24 572 aaKnown RBP eCLIP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CEP295NLQ96MC4 621 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 MIPEPQ99797 713 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 EFCAB11Q9BUY7 163 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TAPBPLQ9BX59 468 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 LRRC3Q9BY71 257 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 POPDC3Q9HBV1 291 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 HMX1Q9NP08 348 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SLC35C2Q9NQQ7 365 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 C1orf109Q9NX04 203 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PDP1Q9P0J1 537 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ABI3Q9P2A4 366 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 GPN3Q9UHW5 284 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SNX10Q9Y5X0 201 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 LRRIQ1Q96JM4 1722 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 A0A087X0B3 334 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 GLYATL1P3A0A0U1RQE8 302 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 KLHL33A6NCF5 533 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 UNCXA6NJT0 531 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PRR5-ARHGAP8B1AHC4 643 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 DNAJB6O75190 326 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 KRT33AO76009 404 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CSPG5O95196 566 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 NFATC1O95644 943 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 UBA1P22314 1058 aaKnown RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 BDNFP23560 247 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SSR2P43308 183 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SCNN1GP51170 649 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PRMT2P55345 433 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ABATP80404 500 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ARHGAP8P85298 464 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 HSPA14Q0VDF9 509 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TUBB3Q13509 450 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 IL18Q14116 193 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 C3orf67Q6ZVT6 689 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 GALNT13Q8IUC8 556 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PHYKPLQ8IUZ5 450 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TMEM199Q8N511 208 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 MOAP1Q96BY2 351 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ASB9Q96DX5 294 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 FEM1CQ96JP0 617 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TRIB3Q96RU7 358 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CNPPD1Q9BV87 410 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 GPR88Q9GZN0 384 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ZDHHC6Q9H6R6 413 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 LRRC4CQ9HCJ2 640 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TOR4AQ9NXH8 423 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 MOCS1Q9NZB8 636 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 POLLQ9UGP5 575 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ASB3Q9Y575 518 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PTPRJQ12913 1337 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 MROH2AA6NES4 1674 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PLOD2O00469 737 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CLPXO76031 633 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 KAT7O95251 611 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SHBGP04278 402 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PVALBP20472 110 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PRPS1L1P21108 318 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PROZP22891 400 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PERM1Q5SV97 790 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 GPR158Q5T848 1215 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 REP15Q6BDI9 236 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 RAVER1Q8IY67 606 aaKnown RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ADAM32Q8TC27 787 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 LPGAT1Q92604 370 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PEX13Q92968 403 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 NXNL1Q96CM4 212 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ITPKCQ96DU7 683 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 RNF31Q96EP0 1072 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 KAZALD1Q96I82 304 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ART5Q96L15 291 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 AIFM2Q9BRQ8 373 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 LGR4Q9BXB1 951 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 LRRC42Q9Y546 428 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 RIC1Q4ADV7 1423 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 COL3A1P02461 1466 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 FPGTO14772 594 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PLOD3O60568 738 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CILPO75339 1184 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 DPEP1P16444 411 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 EPHX2P34913 555 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 UGT1A3P35503 534 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 DNASE1L1P49184 302 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ERVK-8P63133 956 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CLCQ05315 142 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SEMA5AQ13591 1074 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 KCNC3Q14003 757 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TCEAL1Q15170 157 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TAF1AQ15573 450 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SLC9B1Q4ZJI4 515 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ZC3H12AQ5D1E8 599 aaKnown RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 MON1BQ7L1V2 547 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 LRRC70Q7Z2Q7 622 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 KLHL36Q8N4N3 616 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF513Q8N8E2 541 aaPredicted RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms