RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 HLA-BQ31612 363 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 LRRC73Q5JTD7 316 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 METTL2BQ6P1Q9 378 aaKnown RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 LRIG3Q6UXM1 1119 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 UNC5DQ6UXZ4 953 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 CEP68Q76N32 757 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 LRRTM4Q86VH4 590 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 DNAAF3Q8N9W5 541 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 UBXN10Q96LJ8 280 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 COPS8Q99627 209 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 ROPN1BQ9BZX4 212 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 ARRDC1-AS1Q9H2J1 176 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 RHOJQ9H4E5 214 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 EPB41L1Q9H4G0 881 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 ROPN1Q9HAT0 212 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 GNPTGQ9UJJ9 305 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 DHRS7Q9Y394 339 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 PRSS21Q9Y6M0 314 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 PTPRBP23467 1997 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 UBA6A0AVT1 1052 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 CCDC151A5D8V7 595 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 H0Y8X5 98 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 NTN3O00634 580 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 KLK8O60259 260 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 PSIP1O75475 530 aaKnown RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 PCCBP05166 539 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 HTR1BP28222 390 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 CDKN1CP49918 316 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 VSNL1P62760 191 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 RELAQ04206 551 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 POM121L1PQ3SYA9 428 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 LRRC8EQ6NSJ5 796 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 FAM124AQ86V42 546 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 DPYSL5Q9BPU6 564 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 SPATA16Q9BXB7 569 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 NUSAP1Q9BXS6 441 aaKnown RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 KIR3DX1Q9H7L2 352 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 RDH14Q9HBH5 336 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 SSU72Q9NP77 194 aaKnown RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 SARS2Q9NP81 518 aaKnown RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 DLL3Q9NYJ7 618 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 SPASTQ9UBP0 616 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 KLQ9UEF7 1012 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 WASF3Q9UPY6 502 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 RPS6KL1Q9Y6S9 549 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 KIR2DS5A0A0G2JLQ3 304 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 A0A0G2JNG1 304 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 A0A0U1RQS6 177 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 KIR2DS3K7RE56 304 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 PRMT5O14744 637 aaPredicted RBP6.9□□□□□ -1.31
LIMA1-202ENST00000394943 AHSGP02765 367 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 FAM153BP0C7A2 387 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 SLC2A4P14672 509 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 DGKAP23743 735 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 GPR3P46089 330 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 CLDN2P57739 230 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 SP140Q13342 867 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 BOP1Q14137 746 aaKnown RBP6.9□□□□□ -1.31
LIMA1-202ENST00000394943 KIR2DS5Q14953 304 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 KYNUQ16719 465 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 FAM153CQ494X1 144 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 FAM182AQ5T1J6 154 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 RAET1GQ6H3X3 334 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 FAM45BPQ6NSW5 357 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 TTC23LQ6PF05 361 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 IQCKQ8N0W5 287 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 SFRP1Q8N474 314 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 FAM45AQ8TCE6 357 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 CCDC97Q96F63 343 aaPredicted RBP6.9□□□□□ -1.31
LIMA1-202ENST00000394943 PWWP2AQ96N64 755 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 TFB2MQ9H5Q4 396 aaKnown RBP6.9□□□□□ -1.31
LIMA1-202ENST00000394943 ASB8Q9H765 288 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 TOR4AQ9NXH8 423 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 SAMD15Q9P1V8 674 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 FBXO5Q9UKT4 447 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 ATG2BQ96BY7 2078 aa6.9□□□□□ -1.31
LIMA1-202ENST00000394943 DMDP11532 3685 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 A0A1B0GVT2 93 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PRICKLE3O43900 615 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 FTH1P02794 183 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PIRTP0C851 137 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PLTPP55058 493 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 SESN2P58004 480 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 POU4F1Q01851 419 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PDE1CQ14123 709 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 ELOCQ15369 112 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 FASTKD1Q53R41 847 aaKnown RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 TRMT10BQ6PF06 316 aaKnown RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 FAM151BQ6UXP7 276 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 LRRC56Q8IYG6 542 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PDCD6IPQ8WUM4 868 aaKnown RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PDXPQ96GD0 296 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PHOX2BQ99453 314 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 TTC1Q99614 292 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 TSSK1BQ9BXA7 367 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 GSDMCQ9BYG8 508 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 COPG2Q9UBF2 871 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 A0A087WUV0 522 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 MYO1CO00159 1063 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms