RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 HCAR3P49019 387 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 ALDH9A1P49189 494 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 ARF5P84085 180 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 GRM3Q14832 879 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 SF1Q15637 639 aaKnown RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 OASLQ15646 514 aaKnown RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 SEL1L3Q68CR1 1132 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 LRRC8BQ6P9F7 803 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 RELL1Q8IUW5 271 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 RBFAQ8N0V3 343 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 FBXO39Q8N4B4 442 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 SIDT2Q8NBJ9 832 aaKnown RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 C8orf33Q9H7E9 229 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 SORCS3Q9UPU3 1222 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 ATP6AP2A0A1C7CYW4 349 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 I6L893 689 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 RNGTTO60942 597 aaKnown RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 ATP6AP2O75787 350 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 ITGA2BP08514 1039 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 BGNP21810 368 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 FOXM1Q08050 763 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 INPP5AQ14642 412 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 CYTH1Q15438 398 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 C1orf146Q5VVC0 180 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 PIM3Q86V86 326 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 GPSM1Q86YR5 675 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 PHC3Q8NDX5 983 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 KLHDC7BQ96G42 594 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 C12orf66Q96MD2 445 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 MIPEPQ99797 713 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 MMADHCQ9H3L0 296 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 ZNF358Q9NW07 568 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 NSMCE4AQ9NXX6 385 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 MICAL3Q7RTP6 2002 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 WDR87Q6ZQQ6 2873 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 MUSKO15146 869 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 VNN2O95498 520 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 SEMA4FO95754 770 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 PKMP14618 531 aaKnown RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 HTR7P34969 479 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 CSNK1EP49674 416 aaKnown RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 RAP1GDS1P52306 607 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 BRAT1Q6PJG6 821 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 SPNS2Q8IVW8 549 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 SLC44A2Q8IWA5 706 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 NRSN1Q8IZ57 195 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 CENPIQ92674 756 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-205ENST00000392004 TUBGCP3Q96CW5 907 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 USP29Q9HBJ7 922 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 FOCADQ5VW36 1801 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 CCDC160A6NGH7 325 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 TM9SF1O15321 606 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 LDB2O43679 373 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 USP1O94782 785 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 ENO1P06733 434 aaKnown RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 LYNP07948 512 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 HNRNPLP14866 589 aaKnown RBP eCLIP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 CPA3P15088 417 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 DRD1P21728 446 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 KELP23276 732 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 POLD2P49005 469 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 CDKN1CP49918 316 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 ALDH18A1P54886 795 aaKnown RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 EIF4HQ15056 248 aaKnown RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 HNRNPA1L2Q32P51 320 aaKnown RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 KLHDC10Q6PID8 442 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 IFNEQ86WN2 208 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 MECRQ9BV79 373 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 ACE2Q9BYF1 805 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 ARIH1Q9Y4X5 557 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 FCHO1O14526 889 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 TXNDC9O14530 226 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 POP7O75817 140 aaKnown RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 IDSP22304 550 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 RINLQ6ZS11 566 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 ARHGAP12Q8IWW6 846 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 STYXQ8WUJ0 223 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 JADE3Q92613 823 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 SRPK1Q96SB4 655 aaKnown RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 SLC38A3Q99624 504 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 TMEM245Q9H330 911 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 COG4Q9H9E3 785 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 CHCHD3Q9NX63 227 aaKnown RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 PLAGL1Q9UM63 463 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 GREB1LQ9C091 1923 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 PIEZO1Q92508 2521 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 A0A0G2JN53 185 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 GNG14A0A1W2PPG7 69 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 TP73O15350 636 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 TOP3BO95985 862 aaKnown RBP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 C2P06681 752 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 C6P13671 934 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 ALAS2P22557 587 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 CES1P23141 567 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 PRKCHP24723 683 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 ARSDP51689 593 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.19□□□□□ -0.78
COL6A3-205ENST00000392004 IGDCC3Q8IVU1 814 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 SCUBE1Q8IWY4 988 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 RSPRY1Q96DX4 576 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms