RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 GPR39O43194 453 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 KCNJ13O60928 360 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 C1QL1O75973 258 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 STK10O94804 968 aaKnown RBP21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 VIPP01282 170 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 IDSP22304 550 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 CDC25BP30305 580 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 CA5AP35218 305 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 MAPK9P45984 424 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 SRSF6Q13247 344 aaKnown RBP21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 PRPSAP1Q14558 356 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 PTPRCAPQ14761 206 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 LDLRAP1Q5SW96 308 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 AGAP9Q5VTM2 703 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 TMEM26Q6ZUK4 368 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 PEX26Q7Z412 305 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 SYCE1Q8N0S2 351 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 TXLNBQ8N3L3 684 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 BMPERQ8N8U9 685 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 CCDC110Q8TBZ0 833 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 ART4Q93070 314 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 SPATA13Q96N96 652 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 TTC25Q96NG3 672 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 ZCCHC2Q9C0B9 1178 aaKnown RBP21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 SLC39A1Q9NY26 324 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 ARL5AQ9Y689 179 aa21.35■■□□□ 1.01
CCDC28B-201ENST00000373602 EFCAB7A8K855 629 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 MIF4GDA9UHW6 222 aaKnown RBP21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 ZNF189O75820 626 aaPredicted RBP21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 BRAFP15056 766 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 VCLP18206 1134 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 LPOP22079 712 aaPredicted RBP21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 KIF5AQ12840 1032 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 OLIG2Q13516 323 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 TAF1AQ15573 450 aaPredicted RBP21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 SEPT7Q16181 437 aaKnown RBP21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 SNAP47Q5SQN1 464 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 MANEAQ5SRI9 462 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 GPRC6AQ5T6X5 926 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 KIAA1614Q5VZ46 1190 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 UBL4BQ8N7F7 174 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 RASGEF1AQ8N9B8 481 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 APOL2Q9BQE5 337 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 DESI2Q9BSY9 194 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 ASPSCR1Q9BZE9 553 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 SMOXQ9NWM0 555 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 TRIM10Q9UDY6 481 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 B3GALT1Q9Y5Z6 326 aa21.34■■□□□ 1.01
CCDC28B-201ENST00000373602 SMG1Q96Q15 3661 aaKnown RBP21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 A0A0U1RQJ8 604 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 A8MU76 341 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 STMND1H3BQB6 276 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 RPL10P27635 214 aaKnown RBP21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 CTSCP53634 463 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 DMPKQ09013 629 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 C19orf57Q0VDD7 668 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 MSLNQ13421 630 aaPredicted RBP21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 FAM129CQ86XR2 697 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 TRIM48Q8IWZ4 208 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 KLHDC8BQ8IXV7 354 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 ZNF398Q8TD17 642 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 PPP1R2P1Q96PQ5 205 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 POT1Q9NUX5 634 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 OGFRQ9NZT2 677 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 PACSIN2Q9UNF0 486 aaPredicted RBP21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 DNMT3AQ9Y6K1 912 aaPredicted RBP21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 SLC30A1Q9Y6M5 507 aa21.33■■□□□ 1.01
CCDC28B-201ENST00000373602 FASNP49327 2511 aaKnown RBP21.33■■□□□ 1
CCDC28B-201ENST00000373602 SDK2Q58EX2 2172 aa21.33■■□□□ 1
CCDC28B-201ENST00000373602 MN1Q10571 1320 aaPredicted RBP21.32■■□□□ 1
CCDC28B-201ENST00000373602 MGAQ8IWI9 3026 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 GOLGA6L9A6NEM1 432 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 C5orf60A6NFR6 353 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 C2orf81A6NN90 581 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 DDX3YO15523 660 aaKnown RBP21.32■■□□□ 1
CCDC28B-201ENST00000373602 POP7O75817 140 aaKnown RBP21.32■■□□□ 1
CCDC28B-201ENST00000373602 PRAMEF1O95521 474 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 DRG2P55039 364 aaKnown RBP21.32■■□□□ 1
CCDC28B-201ENST00000373602 RAB15P59190 212 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 MC2RQ01718 297 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 DCAF12Q5T6F0 453 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 VASH2Q86V25 355 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 AMZ2Q86W34 360 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 PLXDC1Q8IUK5 500 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 RBM12BQ8IXT5 1001 aaKnown RBP21.32■■□□□ 1
CCDC28B-201ENST00000373602 TTC13Q8NBP0 860 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 SPC24Q8NBT2 197 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 OR4K2Q8NGD2 314 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 SGF29Q96ES7 293 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 SLC40A1Q9NP59 571 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 WDR37Q9Y2I8 494 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 KCTD3Q9Y597 815 aa21.32■■□□□ 1
CCDC28B-201ENST00000373602 OR52A4PA6NMU1 304 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 FTCDO95954 541 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 C9P02748 559 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 KLF1Q13351 362 aaPredicted RBP21.31■■□□□ 1
CCDC28B-201ENST00000373602 CLCA4Q14CN2 919 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 ANKS6Q68DC2 871 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 DENND5AQ6IQ26 1287 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 TMEM220Q6QAJ8 160 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms