RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 VWCEQ96DN2 955 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 ZNF597Q96LX8 424 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 HERC2P3Q9BVR0 1158 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 SPATA16Q9BXB7 569 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 NOL11Q9H8H0 719 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 EVLQ9UI08 416 aaPredicted RBP20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 ST14Q9Y5Y6 855 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 PABPC4LP0CB38 370 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 PRMT2P55345 433 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 KCNK10P57789 538 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 ERVK-8P63133 956 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 MYBPC1Q00872 1141 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 PCBP2Q15366 365 aaKnown RBP eCLIP20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 C6orf136Q5SQH8 315 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 LETMD1Q6P1Q0 360 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 SBSNQ6UWP8 590 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 FAM110BQ8TC76 370 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 CCT7Q99832 543 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 SLC2A11Q9BYW1 496 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 CIPCQ9C0C6 399 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 ZFYVE1Q9HBF4 777 aa20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 TSR3Q9UJK0 312 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-203ENST00000359902 EME2A4GXA9 379 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 TIPRLO75663 272 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 SLC22A3O75751 556 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 PRAMEF1O95521 474 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 PTRHD1Q6GMV3 140 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 RETSATQ6NUM9 610 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 Q6ZSR9 355 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 SLC29A1Q99808 456 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 C1orf50Q9BV19 199 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 C2orf49Q9BVC5 232 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 BOCQ9BWV1 1114 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 TRIM8Q9BZR9 551 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 CLPBQ9H078 707 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 PAPOLBQ9NRJ5 636 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 CCM2LQ9NUG4 571 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 RIC8BQ9NVN3 520 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 EGFL7Q9UHF1 273 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 AQP12BA6NM10 295 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 ZNF7P17097 686 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 GKP32189 559 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 BNIP2Q12982 314 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 ARHGEF6Q15052 776 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 CNPY1Q3B7I2 92 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 PDCD4Q53EL6 469 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 PAGE3Q5JUK9 113 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 THEMIS2Q5TEJ8 643 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 ISLR2Q6UXK2 745 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 FRA10AC1Q70Z53 315 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 SPPL2CQ8IUH8 684 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 AQP12AQ8IXF9 295 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 AHI1Q8N157 1196 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 TMEM125Q96AQ2 219 aa20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 PAK6Q9NQU5 681 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-203ENST00000359902 GOLGA8CPA6NN73 597 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 HTRA2O43464 458 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 EEDO75530 441 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 BAIAP3O94812 1187 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 TRBC1P01850 177 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 URODP06132 367 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 RPS3P23396 243 aaKnown RBP eCLIP20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 POLE2P56282 527 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 BCL2L1Q07817 233 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 NFYCQ13952 458 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 CDKN3Q16667 212 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 SPATS1Q496A3 300 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 NAIF1Q69YI7 327 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 FAM117BQ6P1L5 589 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 ADAMTSL2Q86TH1 951 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 DDI1Q8WTU0 396 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 PPWD1Q96BP3 646 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 ZNF689Q96CS4 500 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 CIB1Q99828 191 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 TRIM54Q9BYV2 358 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 ASB8Q9H765 288 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 IL26Q9NPH9 171 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 ACTR3BQ9P1U1 418 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 APPL1Q9UKG1 709 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 LZTS1Q9Y250 596 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 TNPO3Q9Y5L0 923 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 C1orf232A0A0U1RR37 186 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 PGM3O95394 542 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 SPATA31D3P0C874 917 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 CLCN2P51788 898 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 POLR2JP52435 117 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 TLE2Q04725 743 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 NFATC2Q13469 925 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 LCN8Q6JVE9 175 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 CNKSR3Q6P9H4 555 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 SPATA31D4Q6ZUB0 917 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 GOLGA7Q7Z5G4 137 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 SNX20Q7Z614 316 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 ANKFN1Q8N957 763 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 DNAJB14Q8TBM8 379 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 METTL6Q8TCB7 284 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 TRIM15Q9C019 465 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 ZNF696Q9H7X3 374 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 CLEC4EQ9ULY5 219 aa20.55■□□□□ 0.88
CCDC88B-203ENST00000359902 PRSS21Q9Y6M0 314 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms