RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 LNP1A1A4G5 178 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 PRR19A6NJB7 356 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SMAPO00193 183 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CDX4O14627 284 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 EIF3HO15372 352 aaKnown RBP eCLIP3.97□□□□□ -1.776e-6■■■□□ 15.8
LIG4-201ENST00000356922 NUAK1O60285 661 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ALDOAP04075 364 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 TSHRP16473 764 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SAT1P21673 171 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 PREPP48147 710 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 EIF3BP55884 814 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 NXPH1P58417 271 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 TAS2R39P59534 338 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SPEM2Q0P670 501 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 DLG1Q12959 904 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 PYCR3Q53H96 274 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 FASTKD1Q53R41 847 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 TRIM61Q5EBN2 209 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZC3H14Q6PJT7 736 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 PACS1Q6VY07 963 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SLC36A4Q6YBV0 504 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SH2D5Q6ZV89 423 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CYS1Q717R9 158 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZNF765Q7L2R6 523 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 HID1Q8IV36 788 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CTAGE3PQ8IX95 158 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 MFSD2AQ8NA29 543 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ATOH1Q92858 354 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 KLHDC7BQ96G42 594 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SCARF2Q96GP6 870 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZIM3Q96PE6 472 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 VPS35Q96QK1 796 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 DHRS4Q9BTZ2 278 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SPATS2LQ9NUQ6 558 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 SMOXQ9NWM0 555 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 VPS18Q9P253 973 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 MTRF1LQ9UGC7 380 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZNHIT2Q9UHR6 403 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CRLS1Q9UJA2 301 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SMG5Q9UPR3 1016 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 KCNK6Q9Y257 313 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CFAP20Q9Y6A4 193 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 SLC30A1Q9Y6M5 507 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 UBA6A0AVT1 1052 aaPredicted RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 PRSS38A1L453 326 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 RGSL1A5PLK6 1076 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 H3BMM5 538 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 ASMTLO95671 621 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 CFIP05156 583 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 TPBGLP0DKB5 382 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 MYCLP1P12525 358 aaPredicted RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 ATP1B2P14415 290 aaPredicted RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 AKT2P31751 481 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 MPLP40238 635 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 CTSKP43235 329 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 CSRP3P50461 194 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 CLCN7P51798 805 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 AFF3P51826 1226 aaKnown RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 HK3P52790 923 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 SRP54P61011 504 aaKnown RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 IRF9Q00978 393 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 CTBSQ01459 385 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 ZNF844Q08AG5 666 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 MGAT5Q09328 741 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 GRIK2Q13002 908 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 BIRC2Q13490 618 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 NFATC4Q14934 902 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 HLA-BQ31612 363 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 CCSMST1Q4G0I0 132 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 PEAR1Q5VY43 1037 aaPredicted RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 PDPK2PQ6A1A2 396 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 AFTPHQ6ULP2 937 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 KYAT3Q6YP21 454 aaKnown RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 SYT12Q8IV01 421 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 PLD6Q8N2A8 252 aaKnown RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 SIDT2Q8NBJ9 832 aaKnown RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 OR56A4Q8NGH8 313 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 PEX13Q92968 403 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 PAFAH2Q99487 392 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 COPS8Q99627 209 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 CARS2Q9HA77 564 aaKnown RBP3.96□□□□□ -1.77
LIG4-201ENST00000356922 PRDM8Q9NQV8 689 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 ZDHHC3Q9NYG2 299 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 ZFATQ9P243 1243 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 TBC1D29Q9UFV1 150 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 PSMD13Q9UNM6 376 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 PLAAQ9Y263 795 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 BTBD3Q9Y2F9 522 aa3.96□□□□□ -1.77
LIG4-201ENST00000356922 TP53BP1Q12888 1972 aaPredicted RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 CCDC151A5D8V7 595 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 OR52A4PA6NMU1 304 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 GOLGA8RI6L899 631 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 VILLO15195 856 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 PHGDHO43175 533 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 POP7O75817 140 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 TRIM16O95361 564 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 TSPAN12O95859 305 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 ACP5P13686 325 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 PBLDP30039 288 aaPredicted RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 GNPDA1P46926 289 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms