RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 GTF2H3Q13889 308 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 MEI1Q5TIA1 1274 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 TMEM220Q6QAJ8 160 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 ABRAXAS1Q6UWZ7 409 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 MICALCLQ6ZW33 695 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 CCDC112Q8NEF3 446 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 OR10G6Q8NH81 332 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 NAT14Q8WUY8 206 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 SH3KBP1Q96B97 665 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 AHCYL2Q96HN2 611 aaKnown RBP18.08■□□□□ 0.48
CLN3-202ENST00000355477 FCRL3Q96P31 734 aaPredicted RBP18.08■□□□□ 0.48
CLN3-202ENST00000355477 BBC3Q96PG8 261 aaPredicted RBP18.08■□□□□ 0.48
CLN3-202ENST00000355477 DPYSL5Q9BPU6 564 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 CPNE5Q9HCH3 593 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 LZTFL1Q9NQ48 299 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 SMOXQ9NWM0 555 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 FOXJ2Q9P0K8 574 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 PDP2Q9P2J9 529 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 PIEZO2Q9H5I5 2752 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 OR2AG2A6NM03 316 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 C9orf172C9J069 976 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 CCL22O00626 93 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 HGSO14964 777 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 LDB2O43679 373 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 DUX1O43812 170 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 POP7O75817 140 aaKnown RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 SRP72O76094 671 aaKnown RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 CRTAMO95727 393 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 FGF3P11487 239 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 TPH1P17752 444 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 PPM1FP49593 454 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 ZNF140P52738 457 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 CXADRP78310 365 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 CCZ1BP86790 482 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 CCZ1P86791 482 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 TMPRSS15P98073 1019 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 TRA2AQ13595 282 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLN3-202ENST00000355477 SOWAHCQ53LP3 525 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 SEL1L2Q5TEA6 688 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 WDR74Q6RFH5 385 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 ZNF662Q6ZS27 426 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 SLC13A5Q86YT5 568 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 NCSTNQ92542 709 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 RTP4Q96DX8 246 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 CCDC97Q96F63 343 aaPredicted RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 STN1Q9H668 368 aaKnown RBP18.07■□□□□ 0.48
CLN3-202ENST00000355477 ASB8Q9H765 288 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 WDR37Q9Y2I8 494 aa18.07■□□□□ 0.48
CLN3-202ENST00000355477 OR52A4PA6NMU1 304 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 PDZK1P1A8MUH7 402 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 LIASO43766 372 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 IDSP22304 550 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 MAPK9P45984 424 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 EPHA4P54764 986 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 CLCA4Q14CN2 919 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 RPS6KA1Q15418 735 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 TGIF1Q15583 401 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 OASLQ15646 514 aaKnown RBP18.06■□□□□ 0.48
CLN3-202ENST00000355477 SNAP47Q5SQN1 464 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 AGAP9Q5VTM2 703 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 BROXQ5VW32 411 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 WASH2PQ6VEQ5 465 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 FAM83HQ6ZRV2 1179 aaPredicted RBP18.06■□□□□ 0.48
CLN3-202ENST00000355477 DET1Q7L5Y6 550 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 AMZ2Q86W34 360 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 BEND7Q8N7W2 519 aaPredicted RBP18.06■□□□□ 0.48
CLN3-202ENST00000355477 C1orf54Q8WWF1 131 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 PMEPA1Q969W9 287 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 SGF29Q96ES7 293 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.06■□□□□ 0.48
CLN3-202ENST00000355477 ZCCHC2Q9C0B9 1178 aaKnown RBP18.06■□□□□ 0.48
CLN3-202ENST00000355477 FAM96AQ9H5X1 160 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 LRRC40Q9H9A6 602 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 WASH6PQ9NQA3 447 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 PIH1D1Q9NWS0 290 aaKnown RBP18.06■□□□□ 0.48
CLN3-202ENST00000355477 OGFRQ9NZT2 677 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 AKAP7Q9P0M2 348 aaPredicted RBP18.06■□□□□ 0.48
CLN3-202ENST00000355477 FEZ2Q9UHY8 353 aaPredicted RBP18.06■□□□□ 0.48
CLN3-202ENST00000355477 ACSL6Q9UKU0 697 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 SLC30A1Q9Y6M5 507 aa18.06■□□□□ 0.48
CLN3-202ENST00000355477 CFAP46Q8IYW2 2715 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 AGAP14A8MT82 685 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 A8MU76 341 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 AP2A1O95782 977 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 VIPP01282 170 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 CCDC175P0C221 793 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 VCLP18206 1134 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 MSH3P20585 1137 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 AKT1P31749 480 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 ARSDP51689 593 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 TMPRSS3P57727 454 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 PDE1BQ01064 536 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 SNX1Q13596 522 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 P3H1Q32P28 736 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 FNBP1LQ5T0N5 605 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 TMEM26Q6ZUK4 368 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 GPR155Q7Z3F1 870 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 ARHGAP22Q7Z5H3 698 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 PRUNE1Q86TP1 453 aa18.05■□□□□ 0.48
CLN3-202ENST00000355477 ZFAND4Q86XD8 727 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms