RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SIM2Q14190 667 aaPredicted RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 NFE2L1Q14494 772 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 MAP7D1Q3KQU3 841 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 HENMT1Q5T8I9 393 aaKnown RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 DUS1LQ6P1R4 473 aaKnown RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 ZNF549Q6P9A3 640 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 TECPR1Q7Z6L1 1165 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 SYNPOQ8N3V7 929 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 RASGEF1AQ8N9B8 481 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 RNF217Q8TC41 542 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 KCNV2Q8TDN2 545 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 DYDC1Q8WWB3 177 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 CLDN23Q96B33 292 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 THOC1Q96FV9 657 aaKnown RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 COQ10AQ96MF6 247 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 ZSCAN5AQ9BUG6 496 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 NFS1Q9Y697 457 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 IQANK1A0A1B0GTG1 560 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 A0A1W2PQ67 120 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 CFAP99D6REC4 459 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 CACNB4O00305 520 aaPredicted RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 HRO43593 1189 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 ZNF217O75362 1048 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 SNRPAP09012 282 aaKnown RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 RALBP11234 206 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 STMN1P16949 149 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 TSPAN8P19075 237 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 HNRNPA2B1P22626 353 aaKnown RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 B4GALNT1Q00973 533 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 PRRT3Q5FWE3 981 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 PLD6Q8N2A8 252 aaKnown RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 BTN2A2Q8WVV5 523 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 SMC6Q96SB8 1091 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 RBBP8Q99708 897 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 CPNE1Q99829 537 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 KLC4Q9NSK0 619 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 DLGAP2Q9P1A6 1054 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 TRMT6Q9UJA5 497 aaKnown RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 DCHS1Q96JQ0 3298 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 TPRP12270 2363 aaKnown RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 PRAMEF33A0A0G2JMD5 474 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 HMX2A2RU54 273 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 NEMP2A6NFY4 417 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 TNFRSF10AO00220 468 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 SPAG6O75602 509 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 ALDOAP04075 364 aaKnown RBP9.09□□□□□ -0.96
USP4-202ENST00000351842 CELA2BP08218 269 aaPredicted RBP9.09□□□□□ -0.96
USP4-202ENST00000351842 PKMP14618 531 aaKnown RBP9.09□□□□□ -0.96
USP4-202ENST00000351842 PDHA2P29803 388 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 AKT2P31751 481 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 LAMB3Q13751 1172 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 STEAP4Q687X5 459 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 RPS27LQ71UM5 84 aaKnown RBP9.09□□□□□ -0.96
USP4-202ENST00000351842 DCBLD1Q8N8Z6 715 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 PHC3Q8NDX5 983 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 ANKRD49Q8WVL7 239 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 PATE1Q8WXA2 126 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 HIC2Q96JB3 615 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 FAM111AQ96PZ2 611 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 C1QTNF7Q9BXJ2 289 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 ALG9Q9H6U8 611 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 SYNDIG1Q9H7V2 258 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 PHPT1Q9NRX4 125 aaPredicted RBP9.09□□□□□ -0.96
USP4-202ENST00000351842 IMP3Q9NV31 184 aaKnown RBP9.09□□□□□ -0.96
USP4-202ENST00000351842 DOLKQ9UPQ8 538 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 TDRKHQ9Y2W6 561 aaKnown RBP9.09□□□□□ -0.96
USP4-202ENST00000351842 VWA7Q9Y334 891 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 FIS1Q9Y3D6 152 aa9.09□□□□□ -0.96
USP4-202ENST00000351842 CEP295Q9C0D2 2601 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 A0A1B0GVT2 93 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 OR52A4PA6NMU1 304 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 A6NNZ2 444 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 PFDN6O15212 129 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 SOD1P00441 154 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 C2P06681 752 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 ZBTB16Q05516 673 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 TUBB8Q3ZCM7 444 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 LGSNQ5TDP6 509 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 KIAA0895LQ68EN5 471 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 MBOAT1Q6ZNC8 495 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 GATAD2AQ86YP4 633 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 C2CD4AQ8NCU7 369 aaPredicted RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 ARMC2Q8NEN0 867 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 GABPB2Q8TAK5 448 aaPredicted RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 LPGAT1Q92604 370 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 PHF21BQ96EK2 531 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 BMFQ96LC9 184 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 LYSMD1Q96S90 227 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 MECRQ9BV79 373 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 FAM129AQ9BZQ8 928 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 TMEM168Q9H0V1 697 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 DPEP2Q9H4A9 486 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 RHOJQ9H4E5 214 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 SLC23A2Q9UGH3 650 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 PLAGL1Q9UM63 463 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 ZNF292O60281 2723 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 SRRM3A6NNA2 597 aaPredicted RBP9.08□□□□□ -0.96
USP4-202ENST00000351842 TK2O00142 265 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 BTN3A1O00481 513 aa9.08□□□□□ -0.96
USP4-202ENST00000351842 COPEO14579 308 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms