RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 GPRC6AQ5T6X5 926 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 STEAP4Q687X5 459 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 TMEM220Q6QAJ8 160 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 PAQR3Q6TCH7 311 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ZYG11AQ6WRX3 759 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 MMAAQ8IVH4 418 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 C12orf76Q8N812 135 aaPredicted RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 LCN9Q8WX39 176 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 TFGQ92734 400 aaPredicted RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 PTCD3Q96EY7 689 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SPATA5L1Q9BVQ7 753 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CRISPLD2Q9H0B8 497 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 TRIT1Q9H3H1 467 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 NDUFA13Q9P0J0 144 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CORO2BQ9UQ03 480 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CHD8Q9HCK8 2581 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 A8MX80 341 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 AKAP10O43572 662 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 VEGFDO43915 354 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SHOX2O60902 331 aaPredicted RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 POP7O75817 140 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ZNF37AP17032 561 aaPredicted RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 TFE3P19532 575 aaPredicted RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 KCNA5P22460 613 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 EEF1B2P24534 225 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CPA2P48052 419 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 USP46P62068 366 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 UBXN2BQ14CS0 331 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 TRIM40Q6P9F5 258 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CEP68Q76N32 757 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CILP2Q8IUL8 1156 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SLC41A1Q8IVJ1 513 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 P3H2Q8IVL5 708 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 FOXJ1Q92949 421 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 MRPL38Q96DV4 380 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 BBS4Q96RK4 519 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 HOPXQ9BPY8 73 aaPredicted RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SHCBP1LQ9BZQ2 653 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CCDC167Q9P0B6 97 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ZNHIT2Q9UHR6 403 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ADGRE2Q9UHX3 823 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 WBP11Q9Y2W2 641 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 KRT75O95678 551 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 MPP1Q00013 466 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ACTN3Q08043 901 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 CHIT1Q13231 466 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TIGD2Q4W5G0 525 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 XKR6Q5GH73 641 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 WDR45BQ5MNZ6 344 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 DCUN1D3Q8IWE4 304 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TTC9BQ8N6N2 239 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ARFGAP1Q8N6T3 406 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 NPWQ8N729 165 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 GLYATL1Q969I3 302 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 PLEKHA8Q96JA3 519 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 BTBD10Q9BSF8 475 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 SYNDIG1Q9H7V2 258 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ANLNQ9NQW6 1124 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 RABL2AQ9UBK7 228 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 OR2AG2A6NM03 316 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 STX16-NPEPL1H3BU86 382 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 STX16O14662 325 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ADAM12O43184 909 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 EPCAMP16422 314 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HOXD9P28356 352 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 DAB2P98082 770 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 SIRPB2Q5JXA9 342 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ANXA8L1Q5VT79 327 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 RALGPS2Q86X27 583 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TMEM132CQ8N3T6 1108 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 CLDN19Q8N6F1 224 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 UGT2B28Q9BY64 529 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 SLC17A7Q9P2U7 560 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 DHRS7Q9Y394 339 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 PIAS3Q9Y6X2 628 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TK2O00142 265 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 NRP2O60462 931 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 SLC35G6P0C7Q6 338 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 UROSP10746 265 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 IMPDH1P20839 514 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 RGS1Q08116 209 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 NFATC2Q13469 925 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 PDE1CQ14123 709 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HEPACAMQ14CZ8 416 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 LRRC26Q2I0M4 334 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 INAVAQ3KP66 663 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 PLEKHS1Q5SXH7 462 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ARHGAP12Q8IWW6 846 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 VN1R2Q8NFZ6 395 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 MED8Q96G25 268 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HERPUD2Q9BSE4 406 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 CCM2Q9BSQ5 444 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 GSDMCQ9BYG8 508 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 STX18Q9P2W9 335 aaKnown RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HAO1Q9UJM8 370 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 DDX60Q8IY21 1712 aaKnown RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 hCG_2014768A0A024R1R8 64 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 IGLV3-10A0A075B6K4 115 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 C2orf78A6NCI8 922 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 KMOO15229 486 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms