RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MID1O15344 667 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 VSTM1Q6UX27 236 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 RBM15BQ8NDT2 890 aaKnown RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 YDJCA8MPS7 323 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 OTCP00480 354 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 TXNL4AP83876 142 aaKnown RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 LSM12Q3MHD2 195 aaKnown RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 USP43Q70EL4 1123 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 ANKS1BQ7Z6G8 1248 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 TOP6BLQ8N6T0 577 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 PLD5Q8N7P1 536 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 PPTC7Q8NI37 304 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 RERGQ96A58 199 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 RHOJQ9H4E5 214 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 REM1O75628 298 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 PAPSS2O95340 614 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 HNRNPLP14866 589 aaKnown RBP eCLIP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 ADAM8P78325 824 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 GRIN3AQ8TCU5 1115 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 TP53INP1Q96A56 240 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 KCNS3Q9BQ31 491 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 AIREO43918 545 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 CYP2B6P20813 491 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 KLRC2P26717 231 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 C10orf82Q8WW14 230 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 KCTD15Q96SI1 283 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 GPATCH1Q9BRR8 931 aaKnown RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 CCDC177Q9NQR7 707 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 SEC16AO15027 2179 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 SAGP10523 405 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ASPAP45381 313 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 MRPS5P82675 430 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 VGLL4Q14135 290 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 GPALPP1Q8IXQ4 340 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 SEC14L1Q92503 715 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 TMEM169Q96HH4 297 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ABHD16BQ9H3Z7 469 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 PAK6Q9NQU5 681 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 FOXO6A8MYZ6 492 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CLK3P49761 638 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 AP2S1P53680 142 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 TPTEP56180 551 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 PPIL2Q13356 520 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 KIAA0319LQ8IZA0 1049 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ADCY4Q8NFM4 1077 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 DNAJB3Q8WWF6 145 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 RFKQ969G6 155 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CHIAQ9BZP6 476 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 PTCH2Q9Y6C5 1203 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ANXA2P2A6NMY6 339 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ANXA2P07355 339 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 MCCD1P59942 119 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ECT2LQ008S8 904 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ANKRD22Q5VYY1 191 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 DGLUCYQ7Z3D6 616 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF567Q8N184 647 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 RNF31Q96EP0 1072 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 RNF38Q9H0F5 515 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ATP13A1Q9HD20 1204 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 PDP1Q9P0J1 537 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 WDR37Q9Y2I8 494 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 U3KQV3 271 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CLDN25C9JDP6 229 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CCNDBP1O95273 360 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 OGNP20774 298 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 MSX2P35548 267 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 AP1S1P61966 158 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 POLR2LP62875 67 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 FSCN1Q16658 493 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 RBM20Q5T481 1227 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ARMC12Q5T9G4 340 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CIR1Q86X95 450 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 GJD3Q8N144 294 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 OR2L3Q8NG85 312 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 FSHRP23945 695 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 GRM5P41594 1212 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 LPCAT4Q643R3 524 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 LGI2Q8N0V4 545 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 JOSD2Q8TAC2 188 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CLPTM1LQ96KA5 538 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 TMEM5Q9Y2B1 443 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 GSTT2BP0CG30 244 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ALDH4A1P30038 563 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CHST15Q7LFX5 561 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 HASPINQ8TF76 798 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 SUCOQ9UBS9 1254 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 AZIN1O14977 448 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 PEX11AO75192 247 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 LDOC1O95751 146 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 WSCD1Q658N2 575 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 LINGO2Q7L985 606 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 PEX5LQ8IYB4 626 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF248Q8NDW4 579 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CSPG4P5Q96PW8 444 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 CDADC1Q9BWV3 514 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF69Q9UC07 566 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 KANTRA0A1W2PQU2 76 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 H3BM21 787 aa9.78□□□□□ -0.84
COL6A3-201ENST00000295550 PPIBP23284 216 aaKnown RBP9.78□□□□□ -0.84
COL6A3-201ENST00000295550 SLC9A3P48764 834 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms