RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 C8orf33Q9H7E9 229 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 DNAJC11Q9NVH1 559 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 CCDC167Q9P0B6 97 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 PSMD12O00232 456 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 KLF11O14901 512 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 KERAO60938 352 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 TOP3BO95985 862 aaKnown RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 CHRM1P11229 460 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 HNRNPA1L2Q32P51 320 aaKnown RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 GRAMD1BQ3KR37 738 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 PLA2G4EQ3MJ16 856 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 EMC10Q5UCC4 262 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 AFMIDQ63HM1 303 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 TANGO2Q6ICL3 276 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 RGS9BPQ6ZS82 235 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 MFSD6LQ8IWD5 586 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 SHDQ96IW2 340 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 PPP3R2Q96LZ3 170 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 ZNF317Q96PQ6 595 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 SLC25A23Q9BV35 468 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 CPEB1Q9BZB8 566 aaKnown RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 PIAS3Q9Y6X2 628 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 EVPLLA8MZ36 301 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 DLX3O60479 287 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 DNAJC8O75937 253 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 TCEA2Q15560 299 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 ZNF77Q15935 545 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 PSAPL1Q6NUJ1 521 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 SCIMPQ6UWF3 145 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 BNC2Q6ZN30 1099 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 PLD6Q8N2A8 252 aaKnown RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 DERL2Q9GZP9 239 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 MIR1-1HGQ9H1L0 117 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 OBP2AQ9NY56 170 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 NOP53Q9NZM5 478 aaKnown RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 STON1Q9Y6Q2 735 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 RECQL5O94762 991 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 KLF8O95600 359 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 ATXN1LP0C7T5 689 aaKnown RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 HGFP14210 728 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 CXCR2P25025 360 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 NTSR1P30989 418 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 PKNOX1P55347 436 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 NFYCQ13952 458 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 CAPN13Q6MZZ7 669 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 ADGRD2Q7Z7M1 963 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 TSPAN33Q86UF1 283 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 TMC8Q8IU68 726 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 WFDC5Q8TCV5 224 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 DHRS4Q9BTZ2 278 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 WDR55Q9H6Y2 383 aaPredicted RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 RMND5AQ9H871 391 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 SLC40A1Q9NP59 571 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 TREX1Q9NSU2 369 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 IMP3Q9NV31 184 aaKnown RBP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 A8MT66 165 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 FPGTO14772 594 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 CACNG3O60359 315 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 VNN2O95498 520 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ZNF37AP17032 561 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-201ENST00000254950 CCR2P41597 374 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SPINT3P49223 89 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ERFP50548 548 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 NAE1Q13564 534 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SLC5A9Q2M3M2 681 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 FBXO48Q5FWF7 155 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 XKR6Q5GH73 641 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 DGKKQ5KSL6 1271 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 FAM109BQ6ICB4 259 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-201ENST00000254950 CRTC1Q6UUV9 634 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 CDHR3Q6ZTQ4 885 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 PIGWQ7Z7B1 504 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ALYREFQ86V81 257 aaKnown RBP11.44□□□□□ -0.58
VPS4A-201ENST00000254950 AMZ2Q86W34 360 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 KRT78Q8N1N4 520 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ZNF781Q8N8C0 355 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 PHC3Q8NDX5 983 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 TSTD1Q8NFU3 115 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ASB16Q96NS5 453 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 IPPKQ9H8X2 491 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 LIMD1Q9UGP4 676 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 EIF2B4Q9UI10 523 aaKnown RBP11.44□□□□□ -0.58
VPS4A-201ENST00000254950 IQCF5A8MTL0 148 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 FSBPO95073 299 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 BPIP17213 487 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 TCN1P20061 433 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-201ENST00000254950 AKT2P31751 481 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ETV3P41162 512 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 TGM3Q08188 693 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ZNF234Q14588 700 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 METTL21CQ5VZV1 264 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SCUBE1Q8IWY4 988 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 KIAA1191Q96A73 305 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 FERD3LQ96RJ6 166 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 BTBD10Q9BSF8 475 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 COPS7BQ9H9Q2 264 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-201ENST00000254950 NDUFAF1Q9Y375 327 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 DHRS7Q9Y394 339 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 MEI4A8MW99 385 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 MRASO14807 208 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms