RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 FNTAP49354 379 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 VPS41P49754 854 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 CDK16Q00536 496 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 GPS1Q13098 491 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 CAMK2BQ13554 666 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 CCDC38Q502W7 563 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 RBM44Q6ZP01 1051 aaKnown RBP16.61■□□□□ 0.25
TRIM28-215ENST00000601150 CCNJLQ8IV13 435 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 NXPE1Q8N323 547 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 GRK7Q8WTQ7 553 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 CDKN2AIPNLQ96HQ2 116 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 ZNF514Q96K75 400 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-215ENST00000601150 OSGEPL1Q9H4B0 414 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 FAM96AQ9H5X1 160 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 SYNDIG1Q9H7V2 258 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 KCND1Q9NSA2 647 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 SLC23A2Q9UGH3 650 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 KNTC1P50748 2209 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 CCDC78A2IDD5 438 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 KCNJ13O60928 360 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 CSO75390 466 aaKnown RBP16.6■□□□□ 0.25
TRIM28-215ENST00000601150 EML2O95834 649 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 RPLP0P05388 317 aaKnown RBP16.6■□□□□ 0.25
TRIM28-215ENST00000601150 RALBP11234 206 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 F3P13726 295 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 VCLP18206 1134 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 TPSB2P20231 275 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 CCL7P80098 99 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 SPIDRQ14159 915 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 TPSAB1Q15661 275 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 ZRANB3Q5FWF4 1079 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 IYDQ6PHW0 289 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 NLRP9Q7RTR0 991 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 ZNF438Q7Z4V0 828 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 SPRED1Q7Z699 444 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 SFRP1Q8N474 314 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 Q8N9G6 341 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-215ENST00000601150 SLC37A2Q8TED4 501 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 HEXDCQ8WVB3 486 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 DCUN1D1Q96GG9 259 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 GFM1Q96RP9 751 aaKnown RBP16.6■□□□□ 0.25
TRIM28-215ENST00000601150 LRRN3Q9H3W5 708 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 RIMKLBQ9ULI2 386 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 SAR1BQ9Y6B6 198 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 UNC13CQ8NB66 2214 aa16.6■□□□□ 0.25
TRIM28-215ENST00000601150 ACACBO00763 2458 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 SPEGQ15772 3267 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 TRBV23OR9-2A0A075B6M9 112 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 TRBV5-4A0A0C4DH59 114 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 A6NCN8 305 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 TMEM8BA6NDV4 472 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 TRABD2BA6NFA1 517 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 OR2AG2A6NM03 316 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 OR5K4A6NMS3 321 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 NTN3O00634 580 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-215ENST00000601150 ZW10O43264 779 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 PROS1P07225 676 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 GPR3P46089 330 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 FASLGP48023 281 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 NPY2RP49146 381 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 CTSCP53634 463 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 SESN2P58004 480 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-215ENST00000601150 CACNG1Q06432 222 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 NR1D2Q14995 579 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 KCTD19Q17RG1 926 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-215ENST00000601150 ISXQ2M1V0 245 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 FNBP1LQ5T0N5 605 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 TSTD2Q5T7W7 516 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 TMEM220Q6QAJ8 160 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 C11orf96Q7Z7L8 435 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 AMZ2Q86W34 360 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 PPHLN1Q8NEY8 458 aaKnown RBP16.59■□□□□ 0.25
TRIM28-215ENST00000601150 COPS8Q99627 209 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 PRDM8Q9NQV8 689 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 ZDHHC3Q9NYG2 299 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 DNAJC16Q9Y2G8 782 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 NEU2Q9Y3R4 380 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 TCAF1Q9Y4C2 921 aa16.59■□□□□ 0.25
TRIM28-215ENST00000601150 DNMT3AQ9Y6K1 912 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-215ENST00000601150 KIR2DS5A0A0G2JLQ3 304 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 A0A0G2JNG1 304 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 A0A1W2PQM1 296 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 CCDC162PA2VCL2 907 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 PRR19A6NJB7 356 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 CFAP99D6REC4 459 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 KIR2DS3K7RE56 304 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 CASC3O15234 703 aaKnown RBP16.58■□□□□ 0.24
TRIM28-215ENST00000601150 PPM1DO15297 605 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 POP7O75817 140 aaKnown RBP16.58■□□□□ 0.24
TRIM28-215ENST00000601150 IDSP22304 550 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 MAGEA6P43360 314 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 CDKN1CP49918 316 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-215ENST00000601150 ARSDP51689 593 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 SARNPP82979 210 aaKnown RBP16.58■□□□□ 0.24
TRIM28-215ENST00000601150 B4GALNT1Q00973 533 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 ACVR1Q04771 509 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 KCNJ11Q14654 390 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 KIR2DS5Q14953 304 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 PCID2Q5JVF3 399 aa16.58■□□□□ 0.24
TRIM28-215ENST00000601150 LRRC8BQ6P9F7 803 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms