RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ASCL3Q9NQ33 180 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 CHRAC1Q9NRG0 131 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 RPS6KL1Q9Y6S9 549 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 FLNBO75369 2602 aaKnown RBP12.6□□□□□ -0.39
UPF1-208ENST00000600012 MGAQ8IWI9 3026 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 TCRBV9S1A1TA0A576 114 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 EME2A4GXA9 379 aaPredicted RBP12.59□□□□□ -0.39
UPF1-208ENST00000600012 IGLON5A6NGN9 336 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 C16orf96A6NNT2 1141 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ANKRD66B4E2M5 251 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 AGPSO00116 658 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 HTRA2O43464 458 aaPredicted RBP12.59□□□□□ -0.39
UPF1-208ENST00000600012 SPAG6O75602 509 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 PIAS1O75925 651 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ZIC2O95409 532 aaPredicted RBP12.59□□□□□ -0.39
UPF1-208ENST00000600012 SLC4A1P02730 911 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ALPIP09923 528 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ADRA1DP25100 572 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ABL2P42684 1182 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 THOP1P52888 689 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 EPHB1P54762 984 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 PFN3P60673 137 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ZNF844Q08AG5 666 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 NR0B2Q15466 257 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 DEFB133Q30KQ1 61 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ANKRD20A4Q4UJ75 823 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ZNF805Q5CZA5 627 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 C3orf38Q5JPI3 329 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 SPANXN3Q5MJ09 141 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 CEP85LQ5SZL2 805 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 GUSBP11Q6P575 273 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 TRMT10BQ6PF06 316 aaKnown RBP12.59□□□□□ -0.39
UPF1-208ENST00000600012 PCSK4Q6UW60 755 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 LRIG3Q6UXM1 1119 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 GDPD4Q6W3E5 623 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 EFL1Q7Z2Z2 1120 aaKnown RBP12.59□□□□□ -0.39
UPF1-208ENST00000600012 UNC5BQ8IZJ1 945 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 LMX1AQ8TE12 382 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 EPS8L3Q8TE67 593 aaKnown RBP12.59□□□□□ -0.39
UPF1-208ENST00000600012 PIH1D2Q8WWB5 315 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 GLMNQ92990 594 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 MFSD3Q96ES6 412 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 KLHL32Q96NJ5 620 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 RANBP9Q96S59 729 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 NAT9Q9BTE0 207 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 KIFC1Q9BW19 673 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 OSBPL1AQ9BXW6 950 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 ADGRE3Q9BY15 652 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 CPEB1Q9BZB8 566 aaKnown RBP12.59□□□□□ -0.39
UPF1-208ENST00000600012 ACBD3Q9H3P7 528 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 SUV39H2Q9H5I1 410 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 MRM3Q9HC36 420 aaKnown RBP12.59□□□□□ -0.39
UPF1-208ENST00000600012 IL1RAPL1Q9NZN1 696 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 SPASTQ9UBP0 616 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 SLC2A6Q9UGQ3 507 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 KLF15Q9UIH9 416 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 SATB2Q9UPW6 733 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 KCTD3Q9Y597 815 aa12.59□□□□□ -0.39
UPF1-208ENST00000600012 A0A0U1RQS6 177 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 FAM237BA0A1B0GVD1 139 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 EXOC1LA0A1B0GW35 172 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 HEATR9A2RTY3 570 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 KLK10O43240 276 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 SPINT1O43278 529 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 BUD23O43709 281 aaKnown RBP12.58□□□□□ -0.4
UPF1-208ENST00000600012 TCEA3O75764 348 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 USP1O94782 785 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 POLBP06746 335 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 GSTA2P09210 222 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 RBMS1P29558 406 aaKnown RBP12.58□□□□□ -0.4
UPF1-208ENST00000600012 STX2P32856 288 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 SLCO1A2P46721 670 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 RPIAP49247 311 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 EIF2B5Q13144 721 aaKnown RBP12.58□□□□□ -0.4
UPF1-208ENST00000600012 PTK2BQ14289 1009 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 PTPRCAPQ14761 206 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 LONRF1Q17RB8 773 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 TPRG1LQ5T0D9 272 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 ARHGAP40Q5TG30 622 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 ESRP1Q6NXG1 681 aaKnown RBP12.58□□□□□ -0.4
UPF1-208ENST00000600012 RBM44Q6ZP01 1051 aaKnown RBP12.58□□□□□ -0.4
UPF1-208ENST00000600012 GLT6D1Q7Z4J2 308 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 CCNJLQ8IV13 435 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.58□□□□□ -0.4
UPF1-208ENST00000600012 WDR48Q8TAF3 677 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 NAT6Q93015 286 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 ECHDC3Q96DC8 303 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 MRRFQ96E11 262 aaKnown RBP12.58□□□□□ -0.4
UPF1-208ENST00000600012 TBATAQ96M53 351 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 ACSS3Q9H6R3 686 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 CPNE5Q9HCH3 593 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 SMYD2Q9NRG4 433 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.58□□□□□ -0.4
UPF1-208ENST00000600012 SLC17A6Q9P2U8 582 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 APOBEC3BQ9UH17 382 aaKnown RBP12.58□□□□□ -0.4
UPF1-208ENST00000600012 GGT7Q9UJ14 662 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 RABGEF1Q9UJ41 708 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 ITM2BQ9Y287 266 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 PCDHGA8Q9Y5G5 932 aa12.58□□□□□ -0.4
UPF1-208ENST00000600012 ENTPD2Q9Y5L3 495 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms