RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 RSPRY1Q96DX4 576 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 COPS8Q99627 209 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 PFDN4Q9NQP4 134 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 SPATS2LQ9NUQ6 558 aaKnown RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 ELOVL2Q9NXB9 296 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 DEC1Q9P2X7 70 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 TNPO3Q9Y5L0 923 aaKnown RBP14.04□□□□□ -0.16
LIG3-205ENST00000585941 PLXNB3Q9ULL4 1909 aa14.04□□□□□ -0.16
LIG3-205ENST00000585941 CHD9Q3L8U1 2897 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 IGLV3-16A0A075B6K0 115 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 A8MX80 341 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 EIF3FO00303 357 aaPredicted RBP14.03□□□□□ -0.16
LIG3-205ENST00000585941 LEFTY1O75610 366 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 RPS17P08708 135 aaKnown RBP14.03□□□□□ -0.16
LIG3-205ENST00000585941 C1SP09871 688 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 UGT1A6P19224 532 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 UGT1A1P22309 533 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 UGT1A4P22310 534 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 XPAP23025 273 aaPredicted RBP14.03□□□□□ -0.16
LIG3-205ENST00000585941 EEF1DP29692 281 aaKnown RBP14.03□□□□□ -0.16
LIG3-205ENST00000585941 UGT1A3P35503 534 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 UGT1A5P35504 534 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 IRX1P78414 480 aaPredicted RBP14.03□□□□□ -0.16
LIG3-205ENST00000585941 BTKQ06187 659 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 CDC16Q13042 620 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 HERC3Q15034 1050 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 ARSIQ5FYB1 569 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 RARS2Q5T160 578 aaKnown RBP14.03□□□□□ -0.16
LIG3-205ENST00000585941 TMEM184AQ6ZMB5 413 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 MYO1HQ8N1T3 1032 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 ZBTB2Q8N680 514 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 PBX4Q9BYU1 374 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 ZNF385DQ9H6B1 395 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 CERS4Q9HA82 394 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 SMOXQ9NWM0 555 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 CD274Q9NZQ7 290 aa14.03□□□□□ -0.16
LIG3-205ENST00000585941 KIF26AQ9ULI4 1882 aaPredicted RBP14.03□□□□□ -0.16
LIG3-205ENST00000585941 HEPACAM2A8MVW5 462 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 TMEM233B4DJY2 109 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 TRIM24O15164 1050 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 GPR39O43194 453 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 CDK14O94921 469 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 SLC25A14O95258 325 aaPredicted RBP14.02□□□□□ -0.16
LIG3-205ENST00000585941 LMNAP02545 664 aaKnown RBP14.02□□□□□ -0.16
LIG3-205ENST00000585941 PRNPP04156 253 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 S100BP04271 92 aaPredicted RBP14.02□□□□□ -0.16
LIG3-205ENST00000585941 COX4I1P13073 169 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 CCND1P24385 295 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 PBX2P40425 430 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 CPA2P48052 419 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 RAP1GDS1P52306 607 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 CLCQ05315 142 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 TCEAL5Q5H9L2 206 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 GPRC6AQ5T6X5 926 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 TRIM68Q6AZZ1 485 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 FRA10AC1Q70Z53 315 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 PHTF2Q8N3S3 785 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 CHCHD4Q8N4Q1 142 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 RP9Q8TA86 221 aaKnown RBP14.02□□□□□ -0.16
LIG3-205ENST00000585941 SORCS1Q8WY21 1168 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 TIFAQ96CG3 184 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 FAM83CQ9BQN1 747 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 RTKNQ9BST9 563 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 BOCQ9BWV1 1114 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 FAM126AQ9BYI3 521 aaPredicted RBP14.02□□□□□ -0.16
LIG3-205ENST00000585941 NKX2-4Q9H2Z4 354 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 SLC28A3Q9HAS3 691 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 KCTD5Q9NXV2 234 aa14.02□□□□□ -0.16
LIG3-205ENST00000585941 IQCF5A8MTL0 148 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 UBFD1O14562 309 aaKnown RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 GIPC1O14908 333 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 AZIN1O14977 448 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CHUKO15111 745 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 RAD51BO15315 384 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 VPS4BO75351 444 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 TM7SF2O76062 418 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 SIX3O95343 332 aaPredicted RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 OR56A5P0C7T3 313 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 ENO3P13929 434 aaPredicted RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 ARSAP15289 507 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 TIMP2P16035 220 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 SH3BP2P78314 561 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 TGFBIQ15582 683 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 ATP13A5Q4VNC0 1218 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 C6orf163Q5TEZ5 329 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 ERAP2Q6P179 960 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 METTL2BQ6P1Q9 378 aaKnown RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 CHSY3Q70JA7 882 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 DPPA4Q7L190 304 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 SPNS2Q8IVW8 549 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CPA6Q8N4T0 437 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 CFAP61Q8NHU2 1237 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 ZNF483Q8TF39 744 aaPredicted RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 GDPD5Q8WTR4 605 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 MRPL38Q96DV4 380 aaKnown RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 PPP1R36Q96LQ0 422 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 NUSAP1Q9BXS6 441 aaKnown RBP14.01□□□□□ -0.17
LIG3-205ENST00000585941 FAM83DQ9H4H8 585 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 ZFP14Q9HCL3 533 aa14.01□□□□□ -0.17
LIG3-205ENST00000585941 MID1IP1Q9NPA3 183 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms