RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 SQSTM1Q13501 440 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 LDLRAP1Q5SW96 308 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.21□□□□□ -0.45
SS18-225ENST00000585121 NKAIN2Q5VXU1 208 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 AADACL2Q6P093 401 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 FAM151BQ6UXP7 276 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 ARHGEF18Q6ZSZ5 1173 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 GPR155Q7Z3F1 870 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 TRAPPC5Q8IUR0 188 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 TRIM48Q8IWZ4 208 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 CCDC112Q8NEF3 446 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 OR4D9Q8NGE8 314 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 FAM118BQ9BPY3 351 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 IL26Q9NPH9 171 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 TRIM10Q9UDY6 481 aa12.21□□□□□ -0.45
SS18-225ENST00000585121 PACSIN2Q9UNF0 486 aaPredicted RBP12.21□□□□□ -0.45
SS18-225ENST00000585121 IGHV5-10-1A0A0J9YXX1 117 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 C5orf60A6NFR6 353 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 PDZK1P1A8MUH7 402 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 NVLO15381 856 aaKnown RBP12.21□□□□□ -0.46
SS18-225ENST00000585121 BUD23O43709 281 aaKnown RBP12.21□□□□□ -0.46
SS18-225ENST00000585121 KCNJ13O60928 360 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 CRTAMO95727 393 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 EML2O95834 649 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 LPOP22079 712 aaPredicted RBP12.21□□□□□ -0.46
SS18-225ENST00000585121 IDSP22304 550 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 LIMK2P53671 638 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 TAF1AQ15573 450 aaPredicted RBP12.21□□□□□ -0.46
SS18-225ENST00000585121 CHRNA6Q15825 494 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 PLA2G4EQ3MJ16 856 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 SEL1L2Q5TEA6 688 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 TMEM71Q6P5X7 295 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 TMPRSS9Q7Z410 1059 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 CCDC110Q8TBZ0 833 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 CRELD1Q96HD1 420 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 CCDC74BQ96LY2 380 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 UBL7Q96S82 380 aaPredicted RBP12.21□□□□□ -0.46
SS18-225ENST00000585121 TBL1YQ9BQ87 522 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 EPB41L1Q9H4G0 881 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 PRDM8Q9NQV8 689 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 CPNE7Q9UBL6 633 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 FEZ2Q9UHY8 353 aaPredicted RBP12.21□□□□□ -0.46
SS18-225ENST00000585121 GUCA1BQ9UMX6 200 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 DNAJC16Q9Y2G8 782 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 ADGRG1Q9Y653 693 aa12.21□□□□□ -0.46
SS18-225ENST00000585121 TEX51A0A1B0GUA7 166 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 DDX3YO15523 660 aaKnown RBP12.2□□□□□ -0.46
SS18-225ENST00000585121 UGT1A9O60656 530 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 VIPP01282 170 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 UGT1A6P19224 532 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 ITIH1P19827 911 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 UGT1A1P22309 533 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 UGT1A4P22310 534 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 ADRA1AP35348 466 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 UGT1A3P35503 534 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 EPHA4P54764 986 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 PARP6Q2NL67 630 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 RANBP10Q6VN20 620 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 ZNF574Q6ZN55 896 aaPredicted RBP12.2□□□□□ -0.46
SS18-225ENST00000585121 ZNF761Q86XN6 746 aaPredicted RBP12.2□□□□□ -0.46
SS18-225ENST00000585121 FAM71DQ8N9W8 422 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 AGBL5Q8NDL9 886 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 ZNF398Q8TD17 642 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 NCSTNQ92542 709 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 HES6Q96HZ4 224 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 APOL2Q9BQE5 337 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 B3GNT4Q9C0J1 378 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 UGT1A7Q9HAW7 530 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 UGT1A10Q9HAW8 530 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 UGT1A8Q9HAW9 530 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 PCDHB11Q9Y5F2 797 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 ARL5AQ9Y689 179 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 PTPRQQ9UMZ3 2332 aa12.2□□□□□ -0.46
SS18-225ENST00000585121 A6NCN8 305 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 ARHGAP6O43182 974 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 PSMD3O43242 534 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 NRDCO43847 1150 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 HOXB3P14651 431 aaPredicted RBP12.19□□□□□ -0.46
SS18-225ENST00000585121 XRCC1P18887 633 aaPredicted RBP12.19□□□□□ -0.46
SS18-225ENST00000585121 MSH3P20585 1137 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 CD82P27701 267 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 AKT1P31749 480 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 HALP42357 657 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 MAPK9P45984 424 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 C16orf72Q14CZ0 275 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 SEPT7Q16181 437 aaKnown RBP12.19□□□□□ -0.46
SS18-225ENST00000585121 LONRF2Q1L5Z9 754 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 P3H1Q32P28 736 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 WDR74Q6RFH5 385 aaPredicted RBP12.19□□□□□ -0.46
SS18-225ENST00000585121 AMZ2Q86W34 360 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 RBM12BQ8IXT5 1001 aaKnown RBP12.19□□□□□ -0.46
SS18-225ENST00000585121 RCBTB1Q8NDN9 531 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 DDHD1Q8NEL9 900 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 OR4K2Q8NGD2 314 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 USP7Q93009 1102 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 ZNF514Q96K75 400 aaPredicted RBP12.19□□□□□ -0.46
SS18-225ENST00000585121 FRMD8P1Q9BZ68 369 aaPredicted RBP12.19□□□□□ -0.46
SS18-225ENST00000585121 UCK1Q9HA47 277 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 SLC23A2Q9UGH3 650 aa12.19□□□□□ -0.46
SS18-225ENST00000585121 ACSL6Q9UKU0 697 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms