RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MRGPRX2Q96LB1 330 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 TEFMQ96QE5 360 aaKnown RBP20.19■□□□□ 0.82
SHMT1-209ENST00000582653 SLC12A9Q9BXP2 914 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 RBSNQ9H1K0 784 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 OSGEPL1Q9H4B0 414 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 FBXO8Q9NRD0 319 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 NFKBIL1Q9UBC1 381 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-209ENST00000582653 EPN1Q9Y6I3 576 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-209ENST00000582653 DUSP10Q9Y6W6 482 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 CHUKO15111 745 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 MAPK9P45984 424 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 MC2RQ01718 297 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 ATP13A5Q4VNC0 1218 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 ANKS6Q68DC2 871 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 FAM129CQ86XR2 697 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 AVL9Q8NBF6 648 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 RBM41Q96IZ5 413 aaKnown RBP20.18■□□□□ 0.82
SHMT1-209ENST00000582653 QKIQ96PU8 341 aaKnown RBP eCLIP20.18■□□□□ 0.82
SHMT1-209ENST00000582653 PLEKHG4BQ96PX9 1271 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 FCRL5Q96RD9 977 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 SRPK1Q96SB4 655 aaKnown RBP20.18■□□□□ 0.82
SHMT1-209ENST00000582653 TBC1D10AQ9BXI6 508 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 EPB41L1Q9H4G0 881 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 STARD5Q9NSY2 213 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 SCHIP1Q9P0W5 487 aaPredicted RBP20.18■□□□□ 0.82
SHMT1-209ENST00000582653 CPNE7Q9UBL6 633 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 PILRAQ9UKJ1 303 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 DNAJC16Q9Y2G8 782 aa20.18■□□□□ 0.82
SHMT1-209ENST00000582653 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.18■□□□□ 0.82
SHMT1-209ENST00000582653 MTSS1O43312 755 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 BUD23O43709 281 aaKnown RBP20.17■□□□□ 0.82
SHMT1-209ENST00000582653 SLC28A2O43868 658 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 CDK14O94921 469 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 NDUFA10O95299 355 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 XRCC1P18887 633 aaPredicted RBP20.17■□□□□ 0.82
SHMT1-209ENST00000582653 RBL1P28749 1068 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 HMGCLP35914 325 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 NFATC3Q12968 1075 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 INSCQ1MX18 579 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 BBS12Q6ZW61 710 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 ZNF547Q8IVP9 402 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 CACNA2D3Q8IZS8 1091 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 TTC30BQ8N4P2 665 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 IPMKQ8NFU5 416 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 ZPBPQ9BS86 351 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 FAM117AQ9C073 453 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 SDK2Q58EX2 2172 aa20.17■□□□□ 0.82
SHMT1-209ENST00000582653 H7C0C1 242 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 EPOP01588 193 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 ZNF7P17097 686 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-209ENST00000582653 CA5AP35218 305 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 ATP5OP48047 213 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 SLC1A5Q15758 541 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 SEPT7Q16181 437 aaKnown RBP20.16■□□□□ 0.82
SHMT1-209ENST00000582653 PPP2R5EQ16537 467 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 LRRTM4Q86VH4 590 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 BLOC1S5Q8TDH9 187 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 RTP4Q96DX8 246 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 VPS35Q96QK1 796 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 PANX2Q96RD6 677 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 VAT1Q99536 393 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 UCK1Q9HA47 277 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 IL26Q9NPH9 171 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 LUC7LQ9NQ29 371 aaKnown RBP20.16■□□□□ 0.82
SHMT1-209ENST00000582653 RSPH14Q9UHP6 348 aa20.16■□□□□ 0.82
SHMT1-209ENST00000582653 REXO2Q9Y3B8 237 aaKnown RBP20.16■□□□□ 0.82
SHMT1-209ENST00000582653 HACD1B0YJ81 288 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 KMOO15229 486 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 CAPN5O15484 640 aaPredicted RBP20.15■□□□□ 0.82
SHMT1-209ENST00000582653 GPR39O43194 453 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 VEGFDO43915 354 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 UGT1A9O60656 530 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 RAD1O60671 282 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 FAM87AP0C7U9 286 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 LIFP15018 202 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 UGT1A6P19224 532 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 UGT1A1P22309 533 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 UGT1A4P22310 534 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 MAP4P27816 1152 aaKnown RBP20.15■□□□□ 0.82
SHMT1-209ENST00000582653 CTNNA1P35221 906 aaKnown RBP20.15■□□□□ 0.82
SHMT1-209ENST00000582653 NAP1L1P55209 391 aaKnown RBP20.15■□□□□ 0.82
SHMT1-209ENST00000582653 UBE2IP63279 158 aaKnown RBP20.15■□□□□ 0.82
SHMT1-209ENST00000582653 TMEM115Q12893 351 aaPredicted RBP20.15■□□□□ 0.82
SHMT1-209ENST00000582653 CCDC181Q5TID7 509 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 CEACAM20Q6UY09 585 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 RAD9BQ6WBX8 426 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 PLXDC1Q8IUK5 500 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 GDAP1Q8TB36 358 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 MRFAP1L1Q96HT8 127 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 FAM118BQ9BPY3 351 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 TRABDQ9H4I3 376 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 UGT1A7Q9HAW7 530 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 UGT1A10Q9HAW8 530 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 UGT1A8Q9HAW9 530 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 IL17CQ9P0M4 197 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 ZNF624Q9P2J8 865 aaPredicted RBP20.15■□□□□ 0.82
SHMT1-209ENST00000582653 TRIM10Q9UDY6 481 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 KLHL3Q9UH77 587 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 PCDHA3Q9Y5H8 950 aa20.15■□□□□ 0.82
SHMT1-209ENST00000582653 BSNQ9UPA5 3926 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms