RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 SLC5A2P31639 672 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 ETV5P41161 510 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 MLLT3P42568 568 aaPredicted RBP18.12■□□□□ 0.49
CLN3-237ENST00000569030 GDF10P55107 478 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 HHEXQ03014 270 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 NFATC2Q13469 925 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 SQSTM1Q13501 440 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 TAF1AQ15573 450 aaPredicted RBP18.12■□□□□ 0.49
CLN3-237ENST00000569030 ZDHHC20Q5W0Z9 365 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 C11orf96Q7Z7L8 435 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 KLHDC8BQ8IXV7 354 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 RCBTB1Q8NDN9 531 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 GDAP1Q8TB36 358 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 SLC35B2Q8TB61 432 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 KCNE4Q8WWG9 221 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 SLC38A3Q99624 504 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 OSGEPL1Q9H4B0 414 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 SARS2Q9NP81 518 aaKnown RBP18.12■□□□□ 0.49
CLN3-237ENST00000569030 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-237ENST00000569030 TMEM9Q9P0T7 183 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 PISDQ9UG56 409 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 DNAJC16Q9Y2G8 782 aa18.12■□□□□ 0.49
CLN3-237ENST00000569030 PIKFYVEQ9Y2I7 2098 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 STX7O15400 261 aaKnown RBP18.11■□□□□ 0.49
CLN3-237ENST00000569030 KLK10O43240 276 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 JMJD7P0C870 316 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 LPOP22079 712 aaPredicted RBP18.11■□□□□ 0.49
CLN3-237ENST00000569030 MPSTP25325 297 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 LIMK2P53671 638 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 CLPPQ16740 277 aaPredicted RBP18.11■□□□□ 0.49
CLN3-237ENST00000569030 INSCQ1MX18 579 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 OR4K2Q8NGD2 314 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 BRSK1Q8TDC3 778 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 CCDC74BQ96LY2 380 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 TBL1YQ9BQ87 522 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 TIMM29Q9BSF4 260 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 TMEM121Q9BTD3 319 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 TSGA10Q9BZW7 698 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 CPNE7Q9UBL6 633 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 SDK2Q58EX2 2172 aa18.11■□□□□ 0.49
CLN3-237ENST00000569030 KIR2DS5A0A0G2JLQ3 304 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 A0A0G2JNG1 304 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 C2orf81A6NN90 581 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 KIR2DS3K7RE56 304 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 ARHGAP6O43182 974 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 KRT86O43790 486 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 PPFIA2O75334 1257 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 KIR2DS5Q14953 304 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 PARP6Q2NL67 630 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 GPRC6AQ5T6X5 926 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 KCTD11Q693B1 232 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 ARHGEF18Q6ZSZ5 1173 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 SLC9B2Q86UD5 537 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 JAMLQ86YT9 394 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 RASGEF1AQ8N9B8 481 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 OR4D9Q8NGE8 314 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 ZNF398Q8TD17 642 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 ATG4AQ8WYN0 398 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 TMEM159Q96B96 161 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 CMKLR1Q99788 373 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 DPH1Q9BZG8 443 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 ARNT2Q9HBZ2 717 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 ZNF624Q9P2J8 865 aaPredicted RBP18.1■□□□□ 0.49
CLN3-237ENST00000569030 FKBPLQ9UIM3 349 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 SSUH2Q9Y2M2 353 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 PCDHGA7Q9Y5G6 932 aa18.1■□□□□ 0.49
CLN3-237ENST00000569030 KALRNO60229 2985 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 OR5K4A6NMS3 321 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 CCL4P13236 92 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 SLC2A4P14672 509 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 BRAFP15056 766 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 RPL10P27635 214 aaKnown RBP18.09■□□□□ 0.49
CLN3-237ENST00000569030 CTSCP53634 463 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 MAPK10P53779 464 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 UBE2IP63279 158 aaKnown RBP18.09■□□□□ 0.49
CLN3-237ENST00000569030 GPLD1P80108 840 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 XIAPP98170 497 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 SEPT7Q16181 437 aaKnown RBP18.09■□□□□ 0.49
CLN3-237ENST00000569030 LDLRAP1Q5SW96 308 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 TMEM71Q6P5X7 295 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 TRAPPC5Q8IUR0 188 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 LRRC8AQ8IWT6 810 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 TAB3Q8N5C8 712 aaPredicted RBP18.09■□□□□ 0.49
CLN3-237ENST00000569030 DDHD1Q8NEL9 900 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 OR13C4Q8NGS5 318 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 USP7Q93009 1102 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 TTC25Q96NG3 672 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 PPP1R2P1Q96PQ5 205 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 TBC1D10AQ9BXI6 508 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 ATRXP46100 2492 aa18.09■□□□□ 0.49
CLN3-237ENST00000569030 PRAMEF33A0A0G2JMD5 474 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 NVLO15381 856 aaKnown RBP18.08■□□□□ 0.48
CLN3-237ENST00000569030 PRAMEF10O60809 474 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 ZNF189O75820 626 aaPredicted RBP18.08■□□□□ 0.48
CLN3-237ENST00000569030 PRAMEF1O95521 474 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 THRAP10827 490 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 XRCC1P18887 633 aaPredicted RBP18.08■□□□□ 0.48
CLN3-237ENST00000569030 SLC19A1P41440 591 aa18.08■□□□□ 0.48
CLN3-237ENST00000569030 DRG2P55039 364 aaKnown RBP18.08■□□□□ 0.48
CLN3-237ENST00000569030 CLN3Q13286 438 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms