RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 A0A1W2PQ67 120 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 GTPBP10A4D1E9 387 aaKnown RBP11.54□□□□□ -0.56
CLK3-222ENST00000568232 FADS2P1A8MWK0 482 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 BIN1O00499 593 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 GRID2O43424 1007 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 HOXB4P17483 251 aaPredicted RBP11.54□□□□□ -0.56
CLK3-222ENST00000568232 PTGER4P35408 488 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 RENBPP51606 427 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 RRADP55042 308 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 GPR18Q14330 331 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 GPR19Q15760 415 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 CA9Q16790 459 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 PLA2G4EQ3MJ16 856 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 PLEKHS1Q5SXH7 462 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 CYB5D1Q6P9G0 228 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 IGFL3Q6UXB1 125 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 Q6ZS92 163 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 USP45Q70EL2 814 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 ZNF765Q7L2R6 523 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 NLRP8Q86W28 1048 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 TMEM126BQ8IUX1 230 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 ZNF295-AS1Q8N0V1 137 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 MMP21Q8N119 569 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 TTC30BQ8N4P2 665 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 AOPEPQ8N6M6 819 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 AVL9Q8NBF6 648 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 EPS8L1Q8TE68 723 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 SNX21Q969T3 373 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 ZNF514Q96K75 400 aaPredicted RBP11.54□□□□□ -0.56
CLK3-222ENST00000568232 NUDCD1Q96RS6 583 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 WDR24Q96S15 920 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 TRIM8Q9BZR9 551 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 ZNF552Q9H707 407 aaPredicted RBP11.54□□□□□ -0.56
CLK3-222ENST00000568232 ATXN10Q9UBB4 475 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 EPHA6Q9UF33 1036 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 PPIL1Q9Y3C6 166 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 POLEQ07864 2286 aa11.54□□□□□ -0.56
CLK3-222ENST00000568232 DIDO1Q9BTC0 2240 aaKnown RBP11.54□□□□□ -0.56
CLK3-222ENST00000568232 OR52A4PA6NMU1 304 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 MEN1O00255 615 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 DDX3YO15523 660 aaKnown RBP11.53□□□□□ -0.56
CLK3-222ENST00000568232 NUAK1O60285 661 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 CYP1A1P04798 512 aaPredicted RBP11.53□□□□□ -0.56
CLK3-222ENST00000568232 KLK3P07288 261 aaPredicted RBP11.53□□□□□ -0.56
CLK3-222ENST00000568232 CAPN1P07384 714 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 RAB40ALP0C0E4 278 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 BRAFP15056 766 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 ZNF8P17098 575 aaPredicted RBP11.53□□□□□ -0.56
CLK3-222ENST00000568232 RPL10P27635 214 aaKnown RBP11.53□□□□□ -0.56
CLK3-222ENST00000568232 ACY1Q03154 408 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 PTP4A2Q12974 167 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 ART3Q13508 389 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 ZNF235Q14590 738 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 ARMC12Q5T9G4 340 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 BPHLQ86WA6 291 aaPredicted RBP11.53□□□□□ -0.56
CLK3-222ENST00000568232 GRHL3Q8TE85 626 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 ITLN2Q8WWU7 325 aaPredicted RBP11.53□□□□□ -0.56
CLK3-222ENST00000568232 UBXN4Q92575 508 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 MAP3K3Q99759 626 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 SELENOOQ9BVL4 669 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 NLNQ9BYT8 704 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 SLC40A1Q9NP59 571 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 FAM207AQ9NSI2 230 aaPredicted RBP11.53□□□□□ -0.56
CLK3-222ENST00000568232 TMEM63CQ9P1W3 806 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 SEMA5BQ9P283 1151 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 TRIM10Q9UDY6 481 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 DNAJC16Q9Y2G8 782 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 PCNX1Q96RV3 2341 aa11.53□□□□□ -0.56
CLK3-222ENST00000568232 A0A1B0GUH1 482 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 PDZK1P1A8MUH7 402 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 EEF2KO00418 725 aaKnown RBP11.52□□□□□ -0.57
CLK3-222ENST00000568232 CLDN7O95471 211 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 PEX11BO96011 259 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 PYGLP06737 847 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 STSP08842 583 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 COX6B1P14854 86 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 CHRNB2P17787 502 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 ERCC2P18074 760 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 HTR1EP28566 365 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 OTX2P32243 289 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 CLCNKAP51800 687 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 STC1P52823 247 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 MYBPC3Q14896 1274 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 SMYD5Q6GMV2 418 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 CRTC3Q6UUV7 619 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 SPOCD1Q6ZMY3 1216 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 LAPTM4BQ86VI4 370 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 DSELQ8IZU8 1212 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 NXPE1Q8N323 547 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 GALNT16Q8N428 558 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 ZADH2Q8N4Q0 377 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 RAB33BQ9H082 229 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 OR2AG1Q9H205 316 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 CARD9Q9H257 536 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 RMI1Q9H9A7 625 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 KCND1Q9NSA2 647 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 DTLQ9NZJ0 730 aa11.52□□□□□ -0.57
CLK3-222ENST00000568232 NOCTQ9UK39 431 aaKnown RBP11.52□□□□□ -0.57
CLK3-222ENST00000568232 KLF2Q9Y5W3 355 aaPredicted RBP11.52□□□□□ -0.57
CLK3-222ENST00000568232 ADGRG1Q9Y653 693 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms