RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 RPP40O75818 363 aaKnown RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 OR4F21O95013 312 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 FUCA1P04066 466 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 NFKBIAP25963 317 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 HTR7P34969 479 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 MAGEA10P43363 369 aaPredicted RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 STC1P52823 247 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 ARSFP54793 590 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 TBX4P57082 545 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 TSPY1Q01534 308 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 SLC39A12Q504Y0 691 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 MSANTD2Q6P1R3 559 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 DTWD1Q8N5C7 304 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 FAM86B1Q8N7N1 296 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 OR13F1Q8NGS4 319 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 OSCP1Q8WVF1 389 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 FUBP1Q96AE4 644 aaKnown RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 ERLEC1Q96DZ1 483 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 LHPPQ9H008 270 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 RNF181Q9P0P0 153 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 M0QZ92 97 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 DGKQP52824 942 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 LAPTM5Q13571 262 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 NR1D2Q14995 579 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 AASDHQ4L235 1098 aaPredicted RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 FBXL22Q6P050 247 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 CD300LGQ6UXG3 332 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 OR52B6Q8NGF0 335 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 PROKR1Q8TCW9 393 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 MYEOVQ96EZ4 313 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 ZNF599Q96NL3 588 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 CYP2S1Q96SQ9 504 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 SLX1AQ9BQ83 275 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 SMURF2Q9HAU4 748 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 PFDN4Q9NQP4 134 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 WARS2Q9UGM6 360 aaKnown RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 EIF2B4Q9UI10 523 aaKnown RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 DGKBQ9Y6T7 804 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 A0A0U1RQS6 177 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 NOBOXO60393 691 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 CBFA2T3O75081 653 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 C7P10643 843 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 RHOQP17081 205 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 GRK4P32298 578 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 RPL9P32969 192 aaKnown RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 CD97P48960 835 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 MRPS6P82932 125 aaKnown RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 ITGADQ13349 1161 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 COQ5Q5HYK3 327 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 GRAMD4Q6IC98 578 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 ZNF773Q6PK81 442 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 R3HCC1LQ7Z5L2 792 aaKnown RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 PAPD5Q8NDF8 572 aaKnown RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 RSPH1Q8WYR4 309 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 CDKN2AIPNLQ96HQ2 116 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 MS4A4AQ96JQ5 239 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 EXOC2Q96KP1 924 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 RPRD1AQ96P16 312 aaPredicted RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 CSF3RQ99062 836 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 DGCR6LQ9BY27 220 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 CCDC68Q9H2F9 335 aa13.08□□□□□ -0.32
CLN3-210ENST00000563874 SARS2Q9NP81 518 aaKnown RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 PRDM5Q9NQX1 630 aaPredicted RBP13.08□□□□□ -0.32
CLN3-210ENST00000563874 FUOMA2VDF0 154 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 TSPAN3O60637 253 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 RAMP2O60895 175 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 BCL10O95999 233 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 CHEK2O96017 543 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 MBL2P11226 248 aaPredicted RBP13.07□□□□□ -0.32
CLN3-210ENST00000563874 SUOXP51687 545 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 ZNF235Q14590 738 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 C6orf136Q5SQH8 315 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 XAF1Q6GPH4 301 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 SPATA19Q7Z5L4 167 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 SFRP1Q8N474 314 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 LRRC3Q9BY71 257 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 TAS2R13Q9NYV9 303 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 UTS2RQ9UKP6 389 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 DOCK3Q8IZD9 2030 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 UPK1AO00322 258 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 OR1I1O60431 355 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 ESRRBO95718 433 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 RPS17P08708 135 aaKnown RBP13.07□□□□□ -0.32
CLN3-210ENST00000563874 PRR35P0CG20 571 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 UMPSP11172 480 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 EEFSECP57772 596 aaKnown RBP13.07□□□□□ -0.32
CLN3-210ENST00000563874 RELAQ04206 551 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 RAD51Q06609 339 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 MOGQ16653 247 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 PTPRNQ16849 979 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 BEND5Q7L4P6 421 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 COLGALT2Q8IYK4 626 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 ZNF683Q8IZ20 524 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 SCML4Q8N228 414 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 ZBTB8BQ8NAP8 495 aaPredicted RBP13.07□□□□□ -0.32
CLN3-210ENST00000563874 SIDT2Q8NBJ9 832 aaKnown RBP13.07□□□□□ -0.32
CLN3-210ENST00000563874 OR4K2Q8NGD2 314 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 FBXO30Q8TB52 745 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 ITFG1Q8TB96 612 aa13.07□□□□□ -0.32
CLN3-210ENST00000563874 BPIFB1Q8TDL5 484 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms