RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CHRAC1Q9NRG0 131 aa13.41□□□□□ -0.26
SHMT2-228ENST00000557302 SPATS2LQ9NUQ6 558 aaKnown RBP13.41□□□□□ -0.26
SHMT2-228ENST00000557302 SYBUQ9NX95 663 aa13.41□□□□□ -0.26
SHMT2-228ENST00000557302 SLC2A6Q9UGQ3 507 aa13.41□□□□□ -0.26
SHMT2-228ENST00000557302 PADI4Q9UM07 663 aa13.41□□□□□ -0.26
SHMT2-228ENST00000557302 KCNK6Q9Y257 313 aa13.41□□□□□ -0.26
SHMT2-228ENST00000557302 BPTFQ12830 3046 aa13.41□□□□□ -0.26
SHMT2-228ENST00000557302 TRBV5-4A0A0C4DH59 114 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 CCDC162PA2VCL2 907 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 EME2A4GXA9 379 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 NOBOXO60393 691 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 AVILO75366 819 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 URI1O94763 535 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 GP1BAP07359 652 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 ZNF7P17097 686 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 ACRV1P26436 265 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 CDKN1CP49918 316 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 CTSCP53634 463 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 PRAMEP78395 509 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 CKAP4Q07065 602 aaKnown RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 FOXC1Q12948 553 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 INSCQ1MX18 579 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 PLA2G4EQ3MJ16 856 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 C14orf28Q4W4Y0 310 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 IZUMO3Q5VZ72 239 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 ARMC3Q5W041 872 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 CASC4Q6P4E1 433 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 GUSBP11Q6P575 273 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 OGFOD3Q6PK18 319 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 EFL1Q7Z2Z2 1120 aaKnown RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 HOOK3Q86VS8 718 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 SERPINA9Q86WD7 417 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 ZNF547Q8IVP9 402 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 GPR156Q8NFN8 814 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 OR6P1Q8NGX9 317 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 IFI44Q8TCB0 444 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 ADAMTS14Q8WXS8 1223 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 ZNF514Q96K75 400 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 SERPINB12Q96P63 405 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 TIMM29Q9BSF4 260 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 TRIM51Q9BSJ1 452 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 KIFC1Q9BW19 673 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 MRM3Q9HC36 420 aaKnown RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 KLC4Q9NSK0 619 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 SAMD15Q9P1V8 674 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 CDC23Q9UJX2 597 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 MYLKQ15746 1914 aa13.4□□□□□ -0.26
SHMT2-228ENST00000557302 ZNF106Q9H2Y7 1883 aaKnown RBP13.4□□□□□ -0.26
SHMT2-228ENST00000557302 OR51F1A6NGY5 319 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 SDR42E2A6NKP2 422 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 OR2AG2A6NM03 316 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 GOT2P00505 430 aaKnown RBP13.39□□□□□ -0.27
SHMT2-228ENST00000557302 PRSS56P0CW18 603 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 VCLP18206 1134 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 IVDP26440 423 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 FOXN2P32314 431 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 CLCNKAP51800 687 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 E2F1Q01094 437 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 C2orf54Q08AI8 447 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 FNBP1LQ5T0N5 605 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 TMEM220Q6QAJ8 160 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 DHRS13Q6UX07 377 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 MICALCLQ6ZW33 695 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 DET1Q7L5Y6 550 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 MAATS1Q7Z4T9 603 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 RAB44Q7Z6P3 723 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-228ENST00000557302 PIANPQ8IYJ0 282 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 OR6C4Q8NGE1 309 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 OR4L1Q8NH43 312 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 SGF29Q96ES7 293 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 OSGEPL1Q9H4B0 414 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 TREX1Q9NSU2 369 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 ZDHHC3Q9NYG2 299 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 SOX13Q9UN79 622 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 DNAJC16Q9Y2G8 782 aa13.39□□□□□ -0.27
SHMT2-228ENST00000557302 IGLV3-16A0A075B6K0 115 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 MAGEB16A2A368 324 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 FAM187AA6NFU0 413 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 EFCAB8A8MWE9 144 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 SMAPO00193 183 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 SNX2O60749 519 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 KCNJ13O60928 360 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 SLC2A4P14672 509 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 NMBRP28336 390 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 PMLP29590 882 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 MAGEA3P43357 314 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 B4GALNT1Q00973 533 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 BIRC2Q13490 618 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 HLTFQ14527 1009 aaKnown RBP eCLIP13.38□□□□□ -0.27
SHMT2-228ENST00000557302 ITIH4Q14624 930 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 MORF4L2Q15014 288 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 DBN1Q16643 649 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 WHAMMP3Q1A5X7 153 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 BCL7AQ4VC05 210 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 FASTKD1Q53R41 847 aaKnown RBP13.38□□□□□ -0.27
SHMT2-228ENST00000557302 ZNF572Q7Z3I7 529 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-228ENST00000557302 C11orf96Q7Z7L8 435 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 AMZ2Q86W34 360 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 SFTPA2Q8IWL1 248 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms