RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 NPAS1Q99742 590 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 NUSAP1Q9BXS6 441 aaKnown RBP13.71□□□□□ -0.22
SHMT2-226ENST00000556825 CACNA2D2Q9NY47 1150 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 TRAPPC4Q9Y296 219 aa13.71□□□□□ -0.22
SHMT2-226ENST00000556825 A0A1B0GVM2 712 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 CCDC78A2IDD5 438 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 GLAP06280 429 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 CCT3P49368 545 aaKnown RBP13.7□□□□□ -0.22
SHMT2-226ENST00000556825 ALDH6A1Q02252 535 aaKnown RBP13.7□□□□□ -0.22
SHMT2-226ENST00000556825 NFIXQ14938 502 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 MEP1AQ16819 746 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 DUSP6Q16828 381 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 KIF19Q2TAC6 998 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 ATP13A4Q4VNC1 1196 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 CLLU1Q5K131 121 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 SEL1L3Q68CR1 1132 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 GK5Q6ZS86 529 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 GALNT10Q86SR1 603 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 ARL5BQ96KC2 179 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 GPR137Q96N19 417 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 BBS2Q9BXC9 721 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 ILKAPQ9H0C8 392 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-226ENST00000556825 SMOC2Q9H3U7 446 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 C14orf119Q9NWQ9 140 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 INTS6Q9UL03 887 aaKnown RBP13.7□□□□□ -0.22
SHMT2-226ENST00000556825 LIPT1Q9Y234 373 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 USTQ9Y2C2 406 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 FKBP7Q9Y680 259 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 DOCK2Q92608 1830 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 hCG_1818297A0A087WSY0 165 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 CLDN24A6NM45 220 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 POP4O95707 220 aaKnown RBP13.7□□□□□ -0.22
SHMT2-226ENST00000556825 TGFBR1P36897 503 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 POU4F3Q15319 338 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 ARMC4Q5T2S8 1044 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 TTC23Q5W5X9 447 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 CES5AQ6NT32 575 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 TBPL2Q6SJ96 375 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 SPPL2CQ8IUH8 684 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 AMER2Q8N7J2 671 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 PNMA1Q8ND90 353 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 DDX1Q92499 740 aaKnown RBP13.7□□□□□ -0.22
SHMT2-226ENST00000556825 RADILQ96JH8 1075 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 REEP2Q9BRK0 252 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 ASB7Q9H672 318 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 TMEM260Q9NX78 707 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 DAGLAQ9Y4D2 1042 aa13.7□□□□□ -0.22
SHMT2-226ENST00000556825 COL5A3P25940 1745 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-226ENST00000556825 FAM92AA1XBS5 289 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 FAM159BA6NKW6 160 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 PTGES3LE9PB15 166 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 ABCD4O14678 606 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 TBC1D4O60343 1298 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 TSC22D2O75157 780 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 CELF2O95319 508 aaKnown RBP13.69□□□□□ -0.22
SHMT2-226ENST00000556825 CYP11A1P05108 521 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 FGFR2P21802 821 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 KCNA5P22460 613 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 GPC1P35052 558 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 HKDC1Q2TB90 917 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 SPANXN2Q5MJ10 180 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 REP15Q6BDI9 236 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 MPP5Q8N3R9 675 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 CLRN3Q8NCR9 226 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 ELMO1Q92556 727 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 HAS1Q92839 578 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 FUBP1Q96AE4 644 aaKnown RBP13.69□□□□□ -0.22
SHMT2-226ENST00000556825 TBC1D20Q96BZ9 403 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 NAT9Q9BTE0 207 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 BRD9Q9H8M2 597 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 PLAC1Q9HBJ0 212 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 DMAC2Q9NW81 257 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 ZFR2Q9UPR6 939 aaKnown RBP13.69□□□□□ -0.22
SHMT2-226ENST00000556825 CDYLQ9Y232 598 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 PCDHGA9Q9Y5G4 932 aaKnown RBP13.69□□□□□ -0.22
SHMT2-226ENST00000556825 ZNF831Q5JPB2 1677 aa13.69□□□□□ -0.22
SHMT2-226ENST00000556825 A0A0A6YYJ9 748 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 TTC24A2A3L6 582 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 KHNYNO15037 678 aaKnown RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 HS6ST1O60243 411 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 ADAMTS4O75173 837 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 TNFRSF21O75509 655 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 GPIP06744 558 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 CHMP24386 653 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 SP2Q02086 613 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 DPYSL3Q14195 570 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 ANGPT1Q15389 498 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 FUT11Q495W5 492 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 EPC2Q52LR7 807 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 GNASQ5JWF2 1037 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 GLRA4Q5JXX5 417 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 FAM45BPQ6NSW5 357 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 C8orf82Q6P1X6 216 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 ERO1BQ86YB8 467 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 RASAL3Q86YV0 1011 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 ZDHHC13Q8IUH4 622 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 NKAIN4Q8IVV8 208 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 OR8H2Q8N162 312 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 C9orf62Q8N4C0 152 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 OR6M1Q8NGM8 313 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms