RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 SPAG6O75602 509 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 TRBC1P01850 177 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 MYCLP1P12525 358 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-214ENST00000554604 CHN1P15882 459 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 ZNF30P17039 623 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 TPSB2P20231 275 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 HNRNPH2P55795 449 aaKnown RBP12.35□□□□□ -0.43
SHMT2-214ENST00000554604 GPX6P59796 221 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 PPIDQ08752 370 aaKnown RBP12.35□□□□□ -0.43
SHMT2-214ENST00000554604 PRKD1Q15139 912 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-214ENST00000554604 TPSAB1Q15661 275 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 MSS51Q4VC12 460 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 LRRC66Q68CR7 880 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 CRTC1Q6UUV9 634 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 B4GALNT4Q76KP1 1039 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 HEATR4Q86WZ0 1026 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 PELI3Q8N2H9 469 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 ARL10Q8N8L6 244 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 ARRDC2Q8TBH0 407 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 FERMT1Q9BQL6 677 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 LGR4Q9BXB1 951 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 TDRD1Q9BXT4 1180 aaKnown RBP12.35□□□□□ -0.43
SHMT2-214ENST00000554604 CCDC134Q9H6E4 229 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 SUDS3Q9H7L9 328 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-214ENST00000554604 MRPL40Q9NQ50 206 aaKnown RBP12.35□□□□□ -0.43
SHMT2-214ENST00000554604 CTNNAL1Q9UBT7 734 aa12.35□□□□□ -0.43
SHMT2-214ENST00000554604 A0A0U1RQS6 177 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 PRSS38A1L453 326 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 GMNCA6NCL1 334 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 CAPN8A6NHC0 703 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 CSO75390 466 aaKnown RBP12.34□□□□□ -0.43
SHMT2-214ENST00000554604 STK10O94804 968 aaKnown RBP12.34□□□□□ -0.43
SHMT2-214ENST00000554604 FAM107AO95990 144 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 GSTA2P09210 222 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 GCAP28676 217 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 FDFT1P37268 417 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 CD86P42081 329 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 GPR1P46091 355 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 RPL26P61254 145 aaKnown RBP12.34□□□□□ -0.43
SHMT2-214ENST00000554604 NIPAL4Q0D2K0 466 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 SEMA5AQ13591 1074 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 RTP5Q14D33 572 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 KLHL38Q2WGJ6 581 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 BBS9Q3SYG4 887 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 CDCP2Q5VXM1 449 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 ANKMY2Q8IV38 441 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 PALM2Q8IXS6 379 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 CBARPQ8N350 705 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-214ENST00000554604 KYQ8NBH2 561 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 FBXO36Q8NEA4 188 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 FAM46DQ8NEK8 389 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 LPCAT1Q8NF37 534 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 HTR3CQ8WXA8 447 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 AP2M1Q96CW1 435 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 LRRC39Q96DD0 335 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 SPATA13Q96N96 652 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 AGAP3Q96P47 875 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 SMIM14Q96QK8 99 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 WDR83Q9BRX9 315 aaKnown RBP12.34□□□□□ -0.43
SHMT2-214ENST00000554604 TEX101Q9BY14 249 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 ADGRE3Q9BY15 652 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 CEP41Q9BYV8 373 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 BRD8Q9H0E9 1235 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 TMEM168Q9H0V1 697 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 ACSS3Q9H6R3 686 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 SYNDIG1Q9H7V2 258 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 CARS2Q9HA77 564 aaKnown RBP12.34□□□□□ -0.43
SHMT2-214ENST00000554604 ETNK1Q9HBU6 452 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 INTS9Q9NV88 658 aaKnown RBP12.34□□□□□ -0.43
SHMT2-214ENST00000554604 SENP1Q9P0U3 644 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 CD84Q9UIB8 345 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 RABGEF1Q9UJ41 708 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 RPL26L1Q9UNX3 145 aaKnown RBP12.34□□□□□ -0.43
SHMT2-214ENST00000554604 PCDHB1Q9Y5F3 818 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 TEX264Q9Y6I9 313 aa12.34□□□□□ -0.43
SHMT2-214ENST00000554604 C1orf232A0A0U1RR37 186 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 NDUFAB1O14561 156 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 USP12O75317 370 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 PYGLP06737 847 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 ELK3P41970 407 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 CDK3Q00526 305 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 CDK16Q00536 496 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 DPTQ07507 201 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 ZBTB17Q13105 803 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 IHHQ14623 411 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 PERM1Q5SV97 790 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 RBM44Q6ZP01 1051 aaKnown RBP12.33□□□□□ -0.44
SHMT2-214ENST00000554604 ARHGEF18Q6ZSZ5 1173 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 TECPR1Q7Z6L1 1165 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 TRABD2AQ86V40 505 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 CYP4X1Q8N118 509 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 CNTD1Q8N815 330 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 OR6C4Q8NGE1 309 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 WDR48Q8TAF3 677 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 CCDC110Q8TBZ0 833 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 ZNF473Q8WTR7 871 aaKnown RBP12.33□□□□□ -0.44
SHMT2-214ENST00000554604 DCBLD2Q96PD2 775 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 CCT8L2Q96SF2 557 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 CCDC3Q9BQI4 270 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 DHRS4Q9BTZ2 278 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms