RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 FAM78AQ5JUQ0 283 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 POU5F2Q8N7G0 328 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 SORCS1Q8WY21 1168 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 MYLIPQ8WY64 445 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 SMARCD2Q92925 531 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 ASB16Q96NS5 453 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 CDCA3Q99618 268 aaPredicted RBP26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 DENND2DQ9H6A0 471 aaPredicted RBP26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 CERS4Q9HA82 394 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 NUDT4Q9NZJ9 180 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 PKD2L2Q9NZM6 624 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 PRSS21Q9Y6M0 314 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 MYO7AQ13402 2215 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 SKAP2O75563 359 aaPredicted RBP26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 TM7SF2O76062 418 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 THRAP10827 490 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 EZRP15311 586 aaKnown RBP26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 FSHRP23945 695 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 VIPR1P32241 457 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 RGS4P49798 205 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 CDH13P55290 713 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 CRY1Q16526 586 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 TCEAL5Q5H9L2 206 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 TRIM68Q6AZZ1 485 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 CHSY3Q70JA7 882 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 SUGP1Q8IWZ8 645 aaKnown RBP26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 VN1R2Q8NFZ6 395 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 CCDC97Q96F63 343 aaPredicted RBP26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 RTKNQ9BST9 563 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 LATS2Q9NRM7 1088 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 OBP2AQ9NY56 170 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 KLHL42Q9P2K6 505 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 FIS1Q9Y3D6 152 aa26.04■■□□□ 1.76
CCDC88C-205ENST00000553403 RGSL1A5PLK6 1076 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 LRRC14BA6NHZ5 514 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 LEFTY1O75610 366 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 NSG1P42857 185 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 SH3BP2P78314 561 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 SEMG2Q02383 582 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 CLCQ05315 142 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 ARHGEF7Q14155 803 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 ADAMTSL2Q86TH1 951 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 ETFBKMTQ8IXQ9 262 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 PELI3Q8N2H9 469 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 AGAP11Q8TF27 550 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 CATSPER2Q96P56 530 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 LENG8Q96PV6 779 aaPredicted RBP26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 DKK3Q9UBP4 350 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 IL36AQ9UHA7 158 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 SNX2O60749 519 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 SLC25A14O95258 325 aaPredicted RBP26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 TSPAN8P19075 237 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 DGKAP23743 735 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 HK3P52790 923 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 LCP2Q13094 533 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 UGT3A2Q3SY77 523 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 ARSIQ5FYB1 569 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 RP9Q8TA86 221 aaKnown RBP26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 ZNF483Q8TF39 744 aaPredicted RBP26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 MID1IP1Q9NPA3 183 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 ATG2AQ2TAZ0 1938 aa26.03■■□□□ 1.76
CCDC88C-205ENST00000553403 HSFX4A0A1B0GTS1 333 aaPredicted RBP26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 HSFX3A0A1B0GWH4 333 aaPredicted RBP26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 UPK3BL1B0FP48 263 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 UPK3BL2E5RIL1 263 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 TULP3O75386 442 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 PBX2P40425 430 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 ST8SIA6P61647 398 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 GPRC6AQ5T6X5 926 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 C12orf40Q86WS4 652 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 SCUBE1Q8IWY4 988 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 LKAAEAR1Q8TD35 194 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 DTX3LQ8TDB6 740 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 FAM161BQ96MY7 647 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 TRPV4Q9HBA0 871 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 RAD18Q9NS91 495 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 GDE1Q9NZC3 331 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 CD274Q9NZQ7 290 aa26.02■■□□□ 1.76
CCDC88C-205ENST00000553403 IGLV3-16A0A075B6K0 115 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 AZIN1O14977 448 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 ARSAP15289 507 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 TIMP2P16035 220 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 ATP13A5Q4VNC0 1218 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 ZNF805Q5CZA5 627 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 KANK2Q63ZY3 851 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 TMEM198Q66K66 360 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 MYO1HQ8N1T3 1032 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 ZBTB2Q8N680 514 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 TRPC4APQ8TEL6 797 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 FGF13Q92913 245 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 NSUN5Q96P11 429 aaKnown RBP26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 COPS8Q99627 209 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 ZBTB26Q9HCK0 441 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 SPATS2LQ9NUQ6 558 aaKnown RBP26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 ELOVL2Q9NXB9 296 aa26.01■■□□□ 1.75
CCDC88C-205ENST00000553403 LOC100653049A0A140TA62 436 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 MEI4A8MW99 385 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 PEX11AO75192 247 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 KRT34O76011 436 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 TRIM16O95361 564 aa26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms