RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 NUSAP1Q9BXS6 441 aaKnown RBP18.34■□□□□ 0.53
PRPF40B-208ENST00000548436 PLK2Q9NYY3 685 aa18.34■□□□□ 0.53
PRPF40B-208ENST00000548436 NME4O00746 187 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 PRMT5O14744 637 aaPredicted RBP18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 DEFB103AP81534 67 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 RPS6KA2Q15349 733 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 BLOC1S3Q6QNY0 202 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 DCBLD1Q8N8Z6 715 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 OR56A4Q8NGH8 313 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 OR2T11Q8NH01 316 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 DDI1Q8WTU0 396 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 TEX37Q96LM6 180 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 RNF208Q9H0X6 261 aa18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 RC3H2Q9HBD1 1191 aaKnown RBP18.33■□□□□ 0.52
PRPF40B-208ENST00000548436 FXYD1O00168 92 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 ANGPT2O15123 496 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 TEX28O15482 410 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 OR4F21O95013 312 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 CYBBP04839 570 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 MNX1P50219 401 aaPredicted RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 C18orf21Q32NC0 220 aaPredicted RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 PABPC1LQ4VXU2 614 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 GPRIN3Q6ZVF9 776 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 GAREM2Q75VX8 874 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 SPATA19Q7Z5L4 167 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 DDX53Q86TM3 631 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 SERPINA9Q86WD7 417 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 MARVELD2Q8N4S9 558 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 OR52B6Q8NGF0 335 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 LRTOMTQ8WZ04 291 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 CDK15Q96Q40 435 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 BOCQ9BWV1 1114 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 MRPL17Q9NRX2 175 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 SPG21Q9NZD8 308 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 ABCD2Q9UBJ2 740 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 TMCO1Q9UM00 188 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 MYOFQ9NZM1 2061 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 DOCK6Q96HP0 2047 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 PRAMEF1O95521 474 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 GABRR2P28476 465 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 ZFP36L2P47974 494 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 CAPRIN1Q14444 709 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 GALNT4Q8N4A0 578 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 MINDY1Q8N5J2 469 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 DUS3LQ96G46 650 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 PDLIM5Q96HC4 596 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 HOPXQ9BPY8 73 aaPredicted RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 C2orf49Q9BVC5 232 aaPredicted RBP18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 SEMA6AQ9H2E6 1030 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 ZFYVE1Q9HBF4 777 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 AIG1Q9NVV5 245 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 UBAP1Q9NZ09 502 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 RAB26Q9ULW5 256 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 PCDHGB4Q9UN71 923 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 PCDHB1Q9Y5F3 818 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 PCDHGB5Q9Y5G0 923 aa18.32■□□□□ 0.52
PRPF40B-208ENST00000548436 C1orf232A0A0U1RR37 186 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 NRG2O14511 850 aaPredicted RBP18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 TRBC1P01850 177 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 CCL5P13501 91 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 CHN2P52757 468 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 ERVPABLB-1P60509 514 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 RETSATQ6NUM9 610 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 SBSNQ6UWP8 590 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 CERS6Q6ZMG9 384 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 ITIH5Q86UX2 942 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 DHFR2Q86XF0 187 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 BBS7Q8IWZ6 715 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 SLC15A3Q8IY34 581 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 CDYL2Q8N8U2 506 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 RIN3Q8TB24 985 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 GRIN3AQ8TCU5 1115 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 LKAAEAR1Q8TD35 194 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 ZNF382Q96SR6 550 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 CIPCQ9C0C6 399 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 NUDT4Q9NZJ9 180 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 TBX21Q9UL17 535 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 AP4B1Q9Y6B7 739 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 AK5Q9Y6K8 562 aa18.31■□□□□ 0.52
PRPF40B-208ENST00000548436 C15orf38-AP3S2A0A0A6YYH1 394 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 HTRA2O43464 458 aaPredicted RBP18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ZNF821O75541 412 aaPredicted RBP18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CSPG5O95196 566 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CLDN7O95471 211 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CHEK2O96017 543 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ITGB6P18564 788 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ATP6V1B2P21281 511 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 SLC7A1P30825 629 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CDKL1Q00532 357 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 BCL2L1Q07817 233 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 LMAN2Q12907 356 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CDKN3Q16667 212 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 MAP7D1Q3KQU3 841 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 PTRHD1Q6GMV3 140 aaKnown RBP18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 LETMD1Q6P1Q0 360 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 EFL1Q7Z2Z2 1120 aaKnown RBP18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ARPINQ7Z6K5 226 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 HS6ST3Q8IZP7 471 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.3■□□□□ 0.524e-6■■■■■ 41.2
PRPF40B-208ENST00000548436 LRRC58Q96CX6 371 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms