RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 LOC101059948A0A1B0GTJ6 334 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 OR5K4A6NMS3 321 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 KIR2DS3K7RE56 304 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 TERTO14746 1132 aaKnown RBP8.35□□□□□ -1.07
USP28-215ENST00000545608 NKX2-8O15522 239 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 PPFIA2O75334 1257 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 SLC25A14O95258 325 aaPredicted RBP8.35□□□□□ -1.07
USP28-215ENST00000545608 TMEM253P0C7T8 217 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 SLC19A1P41440 591 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 CLCNKAP51800 687 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 EPHA4P54764 986 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 UBE2IP63279 158 aaKnown RBP8.35□□□□□ -1.07
USP28-215ENST00000545608 AP1B1Q10567 949 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 KIR2DS5Q14953 304 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 PCSK7Q16549 785 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 SLC9A4Q6AI14 798 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 BORAQ6PGQ7 559 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 CRTC3Q6UUV7 619 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 ATG14Q6ZNE5 492 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 NT5DC3Q86UY8 548 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 UNC5BQ8IZJ1 945 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 OR8K1Q8NGG5 319 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 SPATA22Q8NHS9 363 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 SLC35G2Q8TBE7 412 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 TADA1Q96BN2 335 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 IMP4Q96G21 291 aaKnown RBP8.35□□□□□ -1.07
USP28-215ENST00000545608 ZNF830Q96NB3 372 aaPredicted RBP8.35□□□□□ -1.07
USP28-215ENST00000545608 AGAP3Q96P47 875 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 CHP1Q99653 195 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 SPATA16Q9BXB7 569 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 ADGRE3Q9BY15 652 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.35□□□□□ -1.07
USP28-215ENST00000545608 SLC25A18Q9H1K4 315 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 STN1Q9H668 368 aaKnown RBP8.35□□□□□ -1.07
USP28-215ENST00000545608 MAGEE1Q9HCI5 957 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 FBXO8Q9NRD0 319 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 KLC4Q9NSK0 619 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 PGPEP1Q9NXJ5 209 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 OGFRQ9NZT2 677 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 TMPRSS11EQ9UL52 423 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.35□□□□□ -1.07
USP28-215ENST00000545608 SLC30A1Q9Y6M5 507 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 SSU72P8A0A1W2PR75 194 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 ZNF487B1APH4 448 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 APOL1O14791 398 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 AURKAO14965 403 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 CHUKO15111 745 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 MTX2O75431 263 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 STK17BO94768 372 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 MT-CYBP00156 380 aaPredicted RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 SLC4A1P02730 911 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 SLC2A4P14672 509 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 ZNF7P17097 686 aaPredicted RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 BPIP17213 487 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 TYRP1P17643 537 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 XRCC1P18887 633 aaPredicted RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 MAP4P27816 1152 aaKnown RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 CSRP3P50461 194 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 GFERP55789 205 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 DCDC1P59894 354 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 CDK18Q07002 472 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 PDK1Q15118 436 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 PLA2G4EQ3MJ16 856 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 KHDC1Q4VXA5 237 aaKnown RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 ZNF569Q5MCW4 686 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 CEACAM20Q6UY09 585 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 PTRH1Q86Y79 214 aaKnown RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 PHYKPLQ8IUZ5 450 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 NLGN4XQ8N0W4 816 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 TRAM1L1Q8N609 369 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 NLGN4YQ8NFZ3 816 aaPredicted RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 GLYATL1Q969I3 302 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 RNF31Q96EP0 1072 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 SLC45A3Q96JT2 553 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 OLFM3Q96PB7 478 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 TEFMQ96QE5 360 aaKnown RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 DNAJC7Q99615 494 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 MAK16Q9BXY0 300 aaKnown RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 GPR63Q9BZJ6 419 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 SLC25A51Q9H1U9 297 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 ADNPQ9H2P0 1102 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 OSGEPL1Q9H4B0 414 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 GLOD4Q9HC38 313 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 BPIFA1Q9NP55 256 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 SPTLC3Q9NUV7 552 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 ZNF624Q9P2J8 865 aaPredicted RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 NFKBIL1Q9UBC1 381 aaPredicted RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 LCMT1Q9UIC8 334 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 DNAJC16Q9Y2G8 782 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 ZNF711Q9Y462 761 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 HYOU1Q9Y4L1 999 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 TMEM184BQ9Y519 407 aaPredicted RBP8.34□□□□□ -1.07
USP28-215ENST00000545608 SPO11Q9Y5K1 396 aa8.34□□□□□ -1.07
USP28-215ENST00000545608 SPTA1P02549 2419 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 LILRA5A6NI73 299 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 PRR19A6NJB7 356 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 ZNF891A8MT65 544 aaPredicted RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 POLR1CO15160 346 aaPredicted RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 CAPN5O15484 640 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms