RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 NINJ2Q9NZG7 142 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 PNMA8BQ9ULN7 279 aaPredicted RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 FRYLO94915 3013 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 WDR87Q6ZQQ6 2873 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 CHUKO15111 745 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 FOXD2O60548 495 aaPredicted RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 DNAJC6O75061 913 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 NDUFS3O75489 264 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 RASGRP1O95267 797 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 CER1O95813 267 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 TNFP01375 233 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 FUCA1P04066 466 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 ATP1B2P14415 290 aaPredicted RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 NME1P15531 152 aaKnown RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 ZNF7P17097 686 aaPredicted RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 ZNF8P17098 575 aaPredicted RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 ENGP17813 658 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 PHBP35232 272 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 B4GALNT1Q00973 533 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 MGAT5Q09328 741 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 TYSND1Q2T9J0 566 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 ZNF542PQ5EBM4 170 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 PRAMEF14Q5SWL7 426 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 RNF187Q5TA31 235 aaPredicted RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 PACS1Q6VY07 963 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 MARK2Q7KZI7 788 aaKnown RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 CNTN4Q8IWV2 1026 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 PNPLA1Q8N8W4 532 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 RASGEF1AQ8N9B8 481 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 PDXPQ96GD0 296 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 ZNF514Q96K75 400 aaPredicted RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 BOCQ9BWV1 1114 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 SLC13A1Q9BZW2 595 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 GAREM1Q9H706 876 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 CARS2Q9HA77 564 aaKnown RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 KLF15Q9UIH9 416 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 SUFUQ9UMX1 484 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 GPR34Q9UPC5 381 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 VPS9D1Q9Y2B5 631 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 TCRBV9S1A1TA0A576 114 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 LNP1A1A4G5 178 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 H3BM21 787 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 JUNDP17535 347 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 STX2P32856 288 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 SLC1A2P43004 574 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 RXRGP48443 463 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 ATXN3P54252 364 aaPredicted RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 HNRNPKP61978 463 aaKnown RBP eCLIP16.91■□□□□ 0.3
LIG1-204ENST00000542460 CTBP1Q13363 440 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 NAA30Q147X3 362 aaPredicted RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 SF3A2Q15428 464 aaKnown RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 PYCR3Q53H96 274 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 TEDDM1Q5T9Z0 273 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 KCTD16Q68DU8 428 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 TRMT10CQ7L0Y3 403 aaKnown RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 GALNT13Q8IUC8 556 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 DENND6AQ8IWF6 608 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 PHACTR4Q8IZ21 702 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 DCLK2Q8N568 766 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 SGF29Q96ES7 293 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 GTPBP2Q9BX10 602 aaKnown RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 INTS10Q9NVR2 710 aaKnown RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 ZFATQ9P243 1243 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 ZNHIT2Q9UHR6 403 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 FBXO5Q9UKT4 447 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 RAB21Q9UL25 225 aa16.91■□□□□ 0.3
LIG1-204ENST00000542460 RIF1Q5UIP0 2472 aaKnown RBP16.91■□□□□ 0.3
LIG1-204ENST00000542460 FAM186AA6NE01 2351 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 GRID2O43424 1007 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 OR1I1O60431 355 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 S1PR4O95977 384 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 TGM1P22735 817 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 GNPDA1P46926 289 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 PMS2P54278 862 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 TMEM220Q6QAJ8 160 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 KIAA0408Q6ZU52 694 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 DET1Q7L5Y6 550 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 LRRTM4Q86VH4 590 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 CLDN19Q8N6F1 224 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 C2CD4AQ8NCU7 369 aaPredicted RBP16.9■□□□□ 0.3
LIG1-204ENST00000542460 CDKL2Q92772 493 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 CCDC97Q96F63 343 aaPredicted RBP16.9■□□□□ 0.3
LIG1-204ENST00000542460 TXLNGYQ9BZA5 131 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 PARD6AQ9NPB6 346 aa16.9■□□□□ 0.3
LIG1-204ENST00000542460 APOBEC3BQ9UH17 382 aaKnown RBP16.9■□□□□ 0.3
LIG1-204ENST00000542460 PTPRZ1P23471 2315 aaPredicted RBP16.89■□□□□ 0.29
LIG1-204ENST00000542460 A0A1B0GTQ1 180 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 OR2AG2A6NM03 316 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 QSOX1O00391 747 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 PRMT5O14744 637 aaPredicted RBP16.89■□□□□ 0.29
LIG1-204ENST00000542460 KMOO15229 486 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 YKT6O15498 198 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 AP2A2O94973 939 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 CTSEP14091 401 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 LEPRP48357 1165 aaKnown RBP16.89■□□□□ 0.29
LIG1-204ENST00000542460 CTSCP53634 463 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 ADARP55265 1226 aaKnown RBP16.89■□□□□ 0.29
LIG1-204ENST00000542460 TRAPPC5Q8IUR0 188 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 MINDY1Q8N5J2 469 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 FBF1Q8TES7 1133 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms