RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PPP1R14CQ8TAE6 165 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ERP27Q96DN0 273 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 SLC6A18Q96N87 628 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 PSKH2Q96QS6 385 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 CINPQ9BW66 212 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 PCED1AQ9H1Q7 454 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ZDHHC6Q9H6R6 413 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ZNF395Q9H8N7 513 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 KCNK13Q9HB14 408 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 HECAQ9UBI9 543 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 IL36AQ9UHA7 158 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 A0A1W2PPC4 97 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 TMCC1O94876 653 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 EPOP01588 193 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 FGF1P05230 155 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 FGF3P11487 239 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 HLA-DPA1P20036 260 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 AFF3P51826 1226 aaKnown RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 USP10Q14694 798 aaKnown RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 KIF19Q2TAC6 998 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 CARD16Q5EG05 197 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 PIP5KL1Q5T9C9 394 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 PSAPL1Q6NUJ1 521 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 RABEPKQ7Z6M1 372 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 C10orf107Q8IVU9 208 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 PCDH20Q8N6Y1 951 aaKnown RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 KLK6Q92876 244 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 FAM131CQ96AQ9 280 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 EXOC2Q96KP1 924 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 COPG2Q9UBF2 871 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 FBXO5Q9UKT4 447 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 ANKRD6Q9Y2G4 727 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 C10orf142B7Z368 130 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 PLRG1O43660 514 aaKnown RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 SYPP08247 313 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 CPA3P15088 417 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 ARFIP2P53365 341 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 NCALDP61601 193 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 SFSWAPQ12872 951 aaKnown RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 GALNT3Q14435 633 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 RFTN1Q14699 578 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 TAF1BQ53T94 588 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 KIAA0408Q6ZU52 694 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 RAPH1Q70E73 1250 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 DEFB124Q8NES8 71 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 TMIEQ8NEW7 156 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 GABPB2Q8TAK5 448 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 CALML6Q8TD86 181 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 CAMK1GQ96NX5 476 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 HEPHQ9BQS7 1158 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 TMEM120AQ9BXJ8 343 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 CEP44Q9C0F1 390 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 C20orf27Q9GZN8 174 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 NOD2Q9HC29 1040 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 THAP1Q9NVV9 213 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 TLK1Q9UKI8 766 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 CA5BQ9Y2D0 317 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 FNDC3AQ9Y2H6 1198 aaKnown RBP11.86□□□□□ -0.51
CLIP1-208ENST00000537004 SNX11Q9Y5W9 270 aa11.86□□□□□ -0.51
CLIP1-208ENST00000537004 ANKRD12Q6UB98 2062 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 AKAP13Q12802 2813 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 PCDH15Q96QU1 1955 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 FAM95CA0A1B0GW59 222 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 PHGDHO43175 533 aaKnown RBP11.85□□□□□ -0.51
CLIP1-208ENST00000537004 LDB2O43679 373 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 KCNK5O95279 499 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 PRNPP04156 253 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 WNT1P04628 370 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 SLC35E2BP0CK96 405 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 RGRP47804 291 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 CD151P48509 253 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 POLD2P49005 469 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 NOVA1P51513 510 aaKnown RBP11.85□□□□□ -0.51
CLIP1-208ENST00000537004 PGGT1BP53609 377 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 SLC14A2Q15849 920 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 HLA-BQ31612 363 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 LRRC73Q5JTD7 316 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 MTDHQ86UE4 582 aaKnown RBP11.85□□□□□ -0.51
CLIP1-208ENST00000537004 CRLF3Q8IUI8 442 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 BLOC1S5Q8TDH9 187 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 TRIB3Q96RU7 358 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 MYOCQ99972 504 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 GAREM1Q9H706 876 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 NMRAL1Q9HBL8 299 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 KCTD3Q9Y597 815 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 LAMA5O15230 3695 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 ZZEF1O43149 2961 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 ACACBO00763 2458 aa11.85□□□□□ -0.51
CLIP1-208ENST00000537004 AURKAO14965 403 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 INSIG1O15503 277 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SLC7A4O43246 635 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 LATO43561 262 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 HAUS5O94927 633 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 NDST3O95803 873 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SERPINE1P05121 402 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 UGT2B4P06133 528 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 MYL2P10916 166 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CR2P20023 1033 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SLC1A6P48664 564 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SCNN1BP51168 640 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms