RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	FAM237A	A0A1B0GTK4	181 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	C15orf62	A8K5M9	175 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ANKRD66	B4E2M5	251 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296		M0QZ24	198 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	FIBP	O43427	364 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	PAGE4	O60829	102 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	JRK	O75564	520 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	HIST1H2AB	P04908	130 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	LDHC	P07864	332 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	FAM106CP	P0CH98	169 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	RARG	P13631	454 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	HLA-DOB	P13765	273 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	HIST1H2AD	P20671	130 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	PSMB10	P40306	273 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	RGS19	P49795	217 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	KRTAP10-6	P60371	365 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-238	ENST00000534296	IK	Q13123	557 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-238	ENST00000534296	KRT33B	Q14525	404 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ADIPOQ	Q15848	244 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	DECR1	Q16698	335 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ALG11	Q2TAA5	492 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	CEP85L	Q5SZL2	805 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	OR7E24	Q6IFN5	339 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ADAM5	Q6NVV9	412 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	CFAP161	Q6P656	301 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	TMCO3	Q6UWJ1	677 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ASB18	Q6ZVZ8	466 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	CHST9	Q7L1S5	443 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	HIST3H2A	Q7L7L0	130 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	DSG4	Q86SJ6	1040 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	EPHX4	Q8IUS5	362 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	MAP7D3	Q8IWC1	876 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	HACE1	Q8IYU2	909 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ZNF34	Q8IZ26	560 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ADGRF2	Q8IZF7	708 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	KBTBD3	Q8NAB2	608 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	APPL2	Q8NEU8	664 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	SLC38A5	Q8WUX1	472 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	APBB2	Q92870	758 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ZKSCAN4	Q969J2	545 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-238	ENST00000534296	FAM120B	Q96EK7	910 aa	Known RBP	2.7	□□□□□ -1.98
CD44-238	ENST00000534296	MMAB	Q96EY8	250 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-238	ENST00000534296	SCRN2	Q96FV2	425 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	PGAM5	Q96HS1	289 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	POLR3C	Q9BUI4	534 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-238	ENST00000534296	TEX12	Q9BXU0	123 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	GLIS2	Q9BZE0	524 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-238	ENST00000534296	CSTL1	Q9H114	145 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	SDF2L1	Q9HCN8	221 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	LTB4R2	Q9NPC1	389 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	CPSF2	Q9P2I0	782 aa	Known RBP	2.7	□□□□□ -1.98
CD44-238	ENST00000534296	OR14J1	Q9UGF5	321 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ACSL5	Q9ULC5	683 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	DLGAP4	Q9Y2H0	992 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	OR2W1	Q9Y3N9	320 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	ZNF711	Q9Y462	761 aa		2.7	□□□□□ -1.98
CD44-238	ENST00000534296	hCG_1807616	A0A1W2PRN6	198 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	LRRC72	A6NJI9	287 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	EIF4E1B	A6NMX2	242 aa	Known RBP	2.69	□□□□□ -1.98
CD44-238	ENST00000534296	KCNN4	O15554	427 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	SYNGR3	O43761	229 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	DOK2	O60496	412 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	PTP4A3	O75365	173 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	DAB1	O75553	588 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	PDE9A	O76083	593 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	MLYCD	O95822	493 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	CSH1	P0DML2	217 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	CSH2	P0DML3	217 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	GJA1	P17302	382 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	GM2A	P17900	193 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	MARK3	P27448	753 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	ICAM3	P32942	547 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	AHR	P35869	848 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	RGS2	P41220	211 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	CAMP	P49913	170 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	HSD17B4	P51659	736 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	MFAP4	P55083	255 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	BRWD1-AS2	P59051	145 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	ISL1	P61371	349 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	MRPS34	P82930	218 aa	Known RBP	2.69	□□□□□ -1.98
CD44-238	ENST00000534296	PMP22	Q01453	160 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	NUCB1	Q02818	461 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	CREB5	Q02930	508 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	CEBPZ	Q03701	1054 aa	Known RBP	2.69	□□□□□ -1.98
CD44-238	ENST00000534296	SREBF2	Q12772	1141 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	ACVR2B	Q13705	512 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	TOMM20	Q15388	145 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	MEA1	Q16626	185 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	PNLIPRP3	Q17RR3	467 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	PLEKHS1	Q5SXH7	462 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	FAM205BP	Q63HN1	556 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	PAPD4	Q6PIY7	484 aa	Known RBP	2.69	□□□□□ -1.98
CD44-238	ENST00000534296	GLDN	Q6ZMI3	551 aa	Predicted RBP	2.69	□□□□□ -1.98
CD44-238	ENST00000534296	ZNF852	Q6ZMS4	543 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	MEX3B	Q6ZN04	569 aa	Known RBP	2.69	□□□□□ -1.98
CD44-238	ENST00000534296	BEST3	Q8N1M1	668 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	WDTC1	Q8N5D0	677 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	SLC24A4	Q8NFF2	622 aa		2.69	□□□□□ -1.98
CD44-238	ENST00000534296	OR1J2	Q8NGS2	313 aa		2.69	□□□□□ -1.98

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