RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 JUPP14923 745 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 TPSB2P20231 275 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 ADRA1DP25100 572 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 FASLGP48023 281 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 FNTAP49354 379 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 CDKN1CP49918 316 aaPredicted RBP12.79□□□□□ -0.36
VPS28-216ENST00000533806 PDX1P52945 283 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 TMPRSS15P98073 1019 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 TRIP13Q15645 432 aaPredicted RBP12.79□□□□□ -0.36
VPS28-216ENST00000533806 TPSAB1Q15661 275 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 GPR33Q49SQ1 333 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 CCDC38Q502W7 563 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.79□□□□□ -0.36
VPS28-216ENST00000533806 CCDC137Q6PK04 289 aaKnown RBP12.79□□□□□ -0.36
VPS28-216ENST00000533806 CRTC3Q6UUV7 619 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 PIANPQ8IYJ0 282 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 NXPE1Q8N323 547 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 DNAAF3Q8N9W5 541 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 WDR48Q8TAF3 677 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 SLCO2A1Q92959 643 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 PEX13Q92968 403 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 CCDC97Q96F63 343 aaPredicted RBP12.79□□□□□ -0.36
VPS28-216ENST00000533806 SGSM3Q96HU1 749 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 NAPGQ99747 312 aaPredicted RBP12.79□□□□□ -0.36
VPS28-216ENST00000533806 KLC4Q9NSK0 619 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 KCNK6Q9Y257 313 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 DNMT3AQ9Y6K1 912 aaPredicted RBP12.79□□□□□ -0.36
VPS28-216ENST00000533806 COL27A1Q8IZC6 1860 aaPredicted RBP12.78□□□□□ -0.36
VPS28-216ENST00000533806 HEATR9A2RTY3 570 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 B4GAT1O43505 415 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 KRT14P02533 472 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 F3P13726 295 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 BRAFP15056 766 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 MC4RP32245 332 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 CCL7P80098 99 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 BASP1P80723 227 aaKnown RBP12.78□□□□□ -0.36
VPS28-216ENST00000533806 DMPKQ09013 629 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 GPS1Q13098 491 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 SQSTM1Q13501 440 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 SKIDA1Q1XH10 827 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 ZNF658BQ4V348 819 aaPredicted RBP12.78□□□□□ -0.36
VPS28-216ENST00000533806 TSTD2Q5T7W7 516 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 LRRC8BQ6P9F7 803 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 ABRAXAS1Q6UWZ7 409 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 UNQ6494/PRO21346Q6UXR6 183 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 WASH2PQ6VEQ5 465 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 PPP1R21Q6ZMI0 780 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 SPRED1Q7Z699 444 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 C17orf53Q8N3J3 647 aaPredicted RBP12.78□□□□□ -0.36
VPS28-216ENST00000533806 KDF1Q8NAX2 398 aaPredicted RBP12.78□□□□□ -0.36
VPS28-216ENST00000533806 GDAP1Q8TB36 358 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 SLC37A2Q8TED4 501 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 CPT1BQ92523 772 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 ZNF514Q96K75 400 aaPredicted RBP12.78□□□□□ -0.36
VPS28-216ENST00000533806 ABCG4Q9H172 646 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 FAM96AQ9H5X1 160 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 WASH6PQ9NQA3 447 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 PRDM8Q9NQV8 689 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 SCHIP1Q9P0W5 487 aaPredicted RBP12.78□□□□□ -0.36
VPS28-216ENST00000533806 DKK4Q9UBT3 224 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 SLC2A6Q9UGQ3 507 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 PCYOX1Q9UHG3 505 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 SAR1BQ9Y6B6 198 aa12.78□□□□□ -0.36
VPS28-216ENST00000533806 ZNF106Q9H2Y7 1883 aaKnown RBP12.78□□□□□ -0.36
VPS28-216ENST00000533806 A0A1W2PNU3 283 aaPredicted RBP12.77□□□□□ -0.37
VPS28-216ENST00000533806 CTAGE9A4FU28 777 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 TRABD2BA6NFA1 517 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 AP3B1O00203 1094 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 KCNJ13O60928 360 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 POP7O75817 140 aaKnown RBP12.77□□□□□ -0.37
VPS28-216ENST00000533806 PROS1P07225 676 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 PRSS56P0CW18 603 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 ITGALP20701 1170 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 PTGIRP43119 386 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 GPR3P46089 330 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 NPY2RP49146 381 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 LMAN1P49257 510 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 UBE2IP63279 158 aaKnown RBP12.77□□□□□ -0.37
VPS28-216ENST00000533806 LAMB3Q13751 1172 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 SEPT6Q14141 434 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 RTP5Q14D33 572 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 ISXQ2M1V0 245 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 BCL7AQ4VC05 210 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 PCID2Q5JVF3 399 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 AGAP9Q5VTM2 703 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 ANKRD22Q5VYY1 191 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 TMEM220Q6QAJ8 160 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 NLRP9Q7RTR0 991 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 TMPRSS9Q7Z410 1059 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 CAND1Q86VP6 1230 aaKnown RBP12.77□□□□□ -0.37
VPS28-216ENST00000533806 CCNJLQ8IV13 435 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 ULK4Q96C45 1275 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 SGF29Q96ES7 293 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 LINC00615Q96LM1 132 aaPredicted RBP12.77□□□□□ -0.37
VPS28-216ENST00000533806 TTC25Q96NG3 672 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 ZCCHC2Q9C0B9 1178 aaKnown RBP12.77□□□□□ -0.37
VPS28-216ENST00000533806 NRSN2Q9GZP1 204 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 LRRN3Q9H3W5 708 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 SARS2Q9NP81 518 aaKnown RBP12.77□□□□□ -0.37
VPS28-216ENST00000533806 CHRAC1Q9NRG0 131 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms