RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 NFATC2Q13469 925 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 TRA2AQ13595 282 aaKnown RBP eCLIP17■□□□□ 0.315e-8■□□□□ 10.4
PHRF1-204ENST00000532550 ITGA9Q13797 1035 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 CHRNA6Q15825 494 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 CHCHD2P9Q5T1J5 151 aaPredicted RBP17■□□□□ 0.31
PHRF1-204ENST00000532550 FAM151BQ6UXP7 276 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 RANBP10Q6VN20 620 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 ZNF761Q86XN6 746 aaPredicted RBP17■□□□□ 0.31
PHRF1-204ENST00000532550 AVL9Q8NBF6 648 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 OR4D9Q8NGE8 314 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 CCDC110Q8TBZ0 833 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 SPATA13Q96N96 652 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 LDHAL6BQ9BYZ2 381 aaPredicted RBP17■□□□□ 0.31
PHRF1-204ENST00000532550 UGT1A7Q9HAW7 530 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 UGT1A10Q9HAW8 530 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 UGT1A8Q9HAW9 530 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 SLC23A2Q9UGH3 650 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 TMPRSS11EQ9UL52 423 aa17■□□□□ 0.31
PHRF1-204ENST00000532550 AHCTF1Q8WYP5 2266 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 HGSO14964 777 aaPredicted RBP16.99■□□□□ 0.31
PHRF1-204ENST00000532550 NVLO15381 856 aaKnown RBP16.99■□□□□ 0.31
PHRF1-204ENST00000532550 HOXB3P14651 431 aaPredicted RBP16.99■□□□□ 0.31
PHRF1-204ENST00000532550 VCLP18206 1134 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 ITIH1P19827 911 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 LPOP22079 712 aaPredicted RBP16.99■□□□□ 0.31
PHRF1-204ENST00000532550 ADRA1AP35348 466 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 TMPRSS3P57727 454 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 PLA2G4EQ3MJ16 856 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 LDLRAP1Q5SW96 308 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 TMEM164Q5U3C3 297 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 TMEM71Q6P5X7 295 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 GPR155Q7Z3F1 870 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 TRAPPC5Q8IUR0 188 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 RCBTB1Q8NDN9 531 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 UBE2Q2Q8WVN8 375 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 HES6Q96HZ4 224 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 CCDC74BQ96LY2 380 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 APOL2Q9BQE5 337 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 GORASP1Q9BQQ3 440 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 TIMM29Q9BSF4 260 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 TSGA10Q9BZW7 698 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 ZCCHC2Q9C0B9 1178 aaKnown RBP16.99■□□□□ 0.31
PHRF1-204ENST00000532550 WDR70Q9NW82 654 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 CPNE7Q9UBL6 633 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 GUCA1BQ9UMX6 200 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 DNAJC16Q9Y2G8 782 aa16.99■□□□□ 0.31
PHRF1-204ENST00000532550 A6NCN8 305 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 C5orf60A6NFR6 353 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 PDZK1P1A8MUH7 402 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 KRT86O43790 486 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 DUX1O43812 170 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 CRTAMO95727 393 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 IDSP22304 550 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 MPSTP25325 297 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 CSTF2P33240 577 aaKnown RBP eCLIP16.98■□□□□ 0.31
PHRF1-204ENST00000532550 C16orf72Q14CZ0 275 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 TAF1AQ15573 450 aaPredicted RBP16.98■□□□□ 0.31
PHRF1-204ENST00000532550 PARP6Q2NL67 630 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 KHDC1Q4VXA5 237 aaKnown RBP16.98■□□□□ 0.31
PHRF1-204ENST00000532550 ARHGEF18Q6ZSZ5 1173 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 ZNF398Q8TD17 642 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 USP7Q93009 1102 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 ARL5AQ9Y689 179 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 SCN8AQ9UQD0 1980 aa16.98■□□□□ 0.31
PHRF1-204ENST00000532550 KCNJ13O60928 360 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 VIPP01282 170 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 XRCC1P18887 633 aaPredicted RBP16.97■□□□□ 0.31
PHRF1-204ENST00000532550 ETV5P41161 510 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 PDE1BQ01064 536 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 CFHR1Q03591 330 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 OLIG2Q13516 323 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 PTPRCAPQ14761 206 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 ZNF547Q8IVP9 402 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 TRIM48Q8IWZ4 208 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 FAM71DQ8N9W8 422 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 AGBL5Q8NDL9 886 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 OR4K2Q8NGD2 314 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 NCSTNQ92542 709 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 TBL1YQ9BQ87 522 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 CPNE5Q9HCH3 593 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 FEZ2Q9UHY8 353 aaPredicted RBP16.97■□□□□ 0.31
PHRF1-204ENST00000532550 CAPN6Q9Y6Q1 641 aa16.97■□□□□ 0.31
PHRF1-204ENST00000532550 IGSF10Q6WRI0 2623 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 PRAMEF33A0A0G2JMD5 474 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 TEX51A0A1B0GUA7 166 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 EIF4E1BA6NMX2 242 aaKnown RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 ARHGAP6O43182 974 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 PRAMEF10O60809 474 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 THRAP10827 490 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 CCL4P13236 92 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 RPL10P27635 214 aaKnown RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 MAPK9P45984 424 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 EPHA4P54764 986 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 CLN3Q13286 438 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 KLF1Q13351 362 aaPredicted RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 SPARCL1Q14515 664 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 SEPT7Q16181 437 aaKnown RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 SOWAHCQ53LP3 525 aaPredicted RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 GPRC6AQ5T6X5 926 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 ARHGAP40Q5TG30 622 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms